Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq58 104 2e-17 seq57 102 8e-17 seq157 98.7 9e-16 seq1 93.3 4e-14 >seq58 Length=2649046 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| ||||| ||||| | || |||||||| || |||||||| || | Sbjct 1147381 CCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1147322 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| |||||||| || ||| |||| || | |||||| || || || Sbjct 1147321 AAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 1147262 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||||||| ||||| | || | |||||||| ||| | Sbjct 1147261 ATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCACC 1147202 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || | || || || ||||||||||| Sbjct 1147201 TCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131017 AAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGC 131076 ||||| || || | ||| | || ||||||||||| |||||||| ||| | || || Sbjct 1146688 AAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGG 1146629 Query 131077 GAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCT 131136 ||| || || || || || || |||||||||| || || || ||||| |||||||| Sbjct 1146628 CCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCC 1146569 Query 131137 TTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTA 131196 ||||| ||| || ||| | | || | || |||| ||| | |||| || Sbjct 1146568 TTGTCTTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTT 1146509 Query 131197 ACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||| || ||||| || ||||| ||||| || ||||| Sbjct 1146508 ATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| ||||| || || | ||| ||||||||||| || |||||||| | | Sbjct 1147609 CCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATC-CGC 1147551 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | | ||||| |||||||| || || | || || | ||||||||| || || Sbjct 1147550 AAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 1147491 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| || ||||| | || | || || | | ||| | Sbjct 1147490 AATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAAC 1147431 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | || || || ||||||||||| Sbjct 1147430 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 >seq57 Length=33024243 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | || | |||||||| || || ||||||||||| Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 18658291 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || || || || ||| | || | ||| || ||||| || || Sbjct 18658292 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGA 18658351 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| || | | || | || |||| ||| |||| Sbjct 18658352 ATGCCTTCTTTGTCTTGGATCTT-TGCTTTCACATTGTCGATGGTGTCGGAGGATTCGAC 18658410 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||||||| ||||| ||||| ||||| |||||||| Sbjct 18658411 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458 >seq157 Length=426068 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||| |||||||| || ||||||||||| | Sbjct 398739 CCACCACGCAGGCGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCC 398680 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || || |||| | | |||||||| || ||| Sbjct 398679 AATGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 398620 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||| | | ||||| Sbjct 398619 ATACCCTCCTTGTCTTGTATCTTTGCCTTCACATTGTCAATTGTATCCGAGCTCTCGACC 398560 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || ||||| || |||||||| ||||| Sbjct 398559 TCCAAAGTAATGGTCTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 398513 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || |||||||| | ||| ||||||||||| || |||||||| | Sbjct 398511 CCACCACGAAGACGAAGGACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCC 398452 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || || |||| | | ||| || || || ||| Sbjct 398451 AAAGTACGACCATCCTCAAGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGG 398392 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | || | ||||| | | ||| | Sbjct 398391 ATACCTTCCTTGTCTTGTATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCAACC 398332 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || ||||| || || || || ||||| Sbjct 398331 TCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 >seq1 Length=34941034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | | ||| || || || || | ||| || |||||||||||||| || || ||| Sbjct 3650474 CCACCTCTGAGACGGAGGACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCT 3650415 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || ||| |||| | | ||||||||| | || Sbjct 3650414 -AGAGTCCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGG 3650356 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| ||||| || ||| | | || | |||||| | | || | Sbjct 3650355 AATTCCCTCCTTGTCTGTGATCTTTGCCTTCACATTGTCAATAGTATCCGAGCTTTCAAC 3650296 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || ||||| |||||||| Sbjct 3650295 TTCAAGTGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | |||||| ||||| | || | || |||||||| || || || |||||| Sbjct 3650019 GCCTCCCCTCAAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGC 3649960 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || || | || | ||||| ||||| || || || |||| | | ||||||||| || | Sbjct 3649959 CAATGTCCTGCCA-TCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 3649901 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||||| ||||| || || ||||| | ||| | ||| || | ||| | Sbjct 3649900 GGATTCCTTCCTTGTCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTCTCAA 3649841 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| || || || || || || ||||| || || |||||||| Sbjct 3649840 CTTCCAAGGTTACTGTCTTGCCTGTGAGGGTTTTAACAAAGATCTGCAT 3649792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | |||||||||||| ||||| |||||||| | Sbjct 3650702 CCACCGCGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCC 3650643 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||||| | |||||| || || |||| | | |||||| || |||||| Sbjct 3650642 AGAGTTCGCCCATCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGATCTGGAGGG 3650583 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 3650582 ATACCTTCCTTGTC 3650569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471775342160640