Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq146 100 2e-16 seq1 95.1 1e-14 >seq146 Length=1334862 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || ||||| || || || || |||||||| || || Sbjct 1120095 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCG 1120036 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| || || |||| || || ||||| || || Sbjct 1120035 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGA 1119976 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || |||| | ||||| | | | | || ||| | ||| Sbjct 1119975 ATTCCTTCTTTGTCTTGGATCTTTGTT--TTCACGTTGTCGATTGTATCGGAAGATTCCA 1119918 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | ||| ||||||||||| || || ||||| || |||||||||||| || Sbjct 1119917 CTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATTCTG 1119865 >seq1 Length=34941034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| ||||||||||| || |||||||| || |||| || || | ||| Sbjct 3650231 AGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCC 3650172 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | || || | ||||||||| | || | ||| || ||||| Sbjct 3650171 TCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCT 3650112 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 | ||| | | |||||| | | | | || || | || ||||| |||||||| Sbjct 3650111 GTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACTTCCAGTGTGATGGTC 3650052 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || ||||| |||||||| Sbjct 3650051 TTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| |||||||| || || | || | || Sbjct 3649775 AGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCTAGAGTCCGACCATCT 3649716 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || ||| | ||||||| || ||||| || | ||||| || || Sbjct 3649715 TCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCA 3649656 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 | ||||| ||| || | | | | |||||| | || || | ||||||||| Sbjct 3649655 GTAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACCTCAAGGGTGATGGTC 3649596 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| |||||||| Sbjct 3649595 TTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 3649564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404889305095540