Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq127 239 6e-58 >seq127 Length=60962716 Score = 239 bits (264), Expect = 6e-58 Identities = 419/602 (70%), Gaps = 10/602 (2%) Strand=Plus/Plus Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 ||||| || ||||| || || || || ||||||| | || ||||| || |||||||| Sbjct 5746933 AAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTT 5746992 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 32776 | || |||||||| |||||||| ||||||||||| ||||| ||| || ||| || || Sbjct 5746993 AAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTGAGAA 5747051 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 32836 ||| || ||||| | ||||| ||||| | |||||| || | | ||| Sbjct 5747052 GAATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCATC 5747111 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 |||||| | | |||||||| ||||||||||| ||||| |||| || || || || Sbjct 5747112 AATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCG 5747171 Query 32897 AAAGAGAT-AG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT--AT 32952 |||||| | || ||||| || | ||| |||| || || || | ||| || | | Sbjct 5747172 AAAGAGGTGAGATTTTTGGGATGA--ATCCTTAATGTAAGTTTC--TAAAAGGAGTGAGT 5747227 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 ||||||| |||||||||||||||||||| |||||||| ||||| || | || || | Sbjct 5747228 ACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAG 5747287 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | || || ||| | ||| || |||| | |||||| ||| ||||| || | Sbjct 5747288 CGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATG 5747347 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | || || || || | || ||| | || |||| ||| ||||| | ||||| | | || Sbjct 5747348 CGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCC 5747407 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | | | ||| |||| ||| |||||||| | |||||||| ||||| || || | Sbjct 5747408 AGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTT 5747467 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 33252 |||| ||||| | |||||| | | |||| |||||| || ||| ||| ||| ||| | Sbjct 5747468 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGT 5747527 Query 33253 TT 33254 || Sbjct 5747528 TT 5747529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633313235581600