Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq127 250 3e-61 seq1 93.3 5e-14 seq44 91.5 2e-13 seq43 89.7 6e-13 seq96 86.0 7e-12 seq61 86.0 7e-12 seq187 84.2 2e-11 seq22 84.2 2e-11 seq145 82.4 8e-11 >seq127 Length=60962716 Score = 250 bits (276), Expect = 3e-61 Identities = 595/889 (67%), Gaps = 19/889 (2%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | || || || ||||||||| | || ||||||||||| ||||| |||| Sbjct 5746632 CATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 5746691 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| ||| | | || | | | |||||| || ||| ||| ||| | Sbjct 5746692 AAGAGAAATCAACTCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACA-AC 5746750 Query 92908 CAA-CTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 ||| | | ||| ||||||||||| ||||| || || |||||| |||||| ||||| | Sbjct 5746751 CAAGCGCAGCCAACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGT 5746810 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||| |||| | | ||||| | || || || || || |||| ||| |||| | Sbjct 5746811 TCATCCCTACCAAAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTG 5746870 Query 93027 CTTCTTTCAAGATTTCTATTACT--CTACTATTTGGTGGTTTTTGTACGACATAATTGTA 93084 | ||||||| || | ||| || || || | | || || | | ||| | || Sbjct 5746871 CATCTTTCACTATCCCCTGCACTTTCTCCTCATTCG-GCTTCTTCTTCAACA-ATCCATA 5746928 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 || ||| || ||||| || ||| | ||||||||||| || ||||| ||||| || Sbjct 5746929 CAATAAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAA 5746988 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAG 93203 |||||||| || | || || || ||||| |||||||| || || ||| ||||| || | Sbjct 5746989 CGTTAAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTG 5747047 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA-- 93261 | || ||||| ||||| | ||||| || | || | || ||||| | | || Sbjct 5747048 AGAAGAATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACC 5747107 Query 93262 -ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | ||||| | | |||||||| || || || || | ||| || | |||| Sbjct 5747108 CATCA------ATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTT 5747161 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 |||| || ||| |||| | | | | ||||| ||||| || || | | | Sbjct 5747162 CGATTGCTCGAAAGAGGTGAGATTTTTGGGATGAATCCTTAATGTAAGTTTCTAAAAGGA 5747221 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || |||||||||||||| | || || || || ||||| || ||||| || | | Sbjct 5747222 GTGAGTACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCG 5747281 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 |||| | || ||||| |||| ||| | || |||||||||| || || |||| Sbjct 5747282 CTTCAGCGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCAT 5747341 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 | ||||| || || || || | | || | || ||||||||||| || | || Sbjct 5747342 CTGATGCGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGG 5747401 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 | ||||| | || ||| ||| |||||||||||||| | |||||||||||||||| Sbjct 5747402 TTTCCCAGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTT 5747461 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 | |||||||||||||| ||||| || | | | |||| |||||| || || Sbjct 5747462 CGGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACAT 5747510 >seq1 Length=34941034 Score = 93.3 bits (102), Expect = 5e-14 Identities = 79/96 (82%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 4217933 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTATGAGGG 4217876 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| ||||||| |||| || Sbjct 4217875 CGTGGGTTCGAACCCCACTTCTGACAATATATTTTT 4217840 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2708833 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2708890 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 2708891 TTCAAATCCCACAGCTGTCAATTT 2708914 >seq44 Length=1466180 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/120 (78%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 126254 CTTCTATTTA-CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC 126312 ||| |||| | | | ||| |||||||||||||||||||||||||||||| | |||||| Sbjct 334146 CTTATATTCATCCGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT-- 334089 Query 126313 CCTCGGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAA--TTTTTGTTG 126370 || | |||||||||| || |||||| ||| ||||| || ||| || | ||||||| Sbjct 334088 CCGAAAGGGCGTGGGTTCAAATCCCACAGCTGTCAAATATTTTTTGCAAATTATTTGTTG 334029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 337624 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 337567 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATT-TTTGTTG 126370 ||| || |||||| ||| ||| || || | |||| ||||||| Sbjct 337566 TTCAAATCCCACAGCTGTCAATTTTTTTTGCAAATTATTTGTTG 337523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 305800 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 305743 Query 126328 TTCGAACCCCACACCTGAC-AAATTATTATTGGA-ATTTTTGTT 126369 ||| || |||||| ||| | ||| | | ||| | ||||||||| Sbjct 305742 TTCAAATCCCACAGCTGTCAAAAATGCTTTTGCATATTTTTGTT 305699 >seq43 Length=26577699 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGG 126319 || ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 5951090 TAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAG 5951149 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 5951150 GGCGTGGGTTCAAATCCCACTTCTGACA 5951177 >seq96 Length=52461754 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2338900 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 2338841 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 2338840 TGGGTTCAAATCCCACTTCTGACA 2338817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 46338798 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 46338855 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| |||| | | || ||||||| Sbjct 46338856 GGGTTCAAATCCCACAGCTGTCAAA--AGTTTTCCAATTTTT 46338895 >seq61 Length=653680 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/110 (78%), Gaps = 10/110 (9%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 374006 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 373949 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||||||| || ||||| |||||| || |||| | |||||||| Sbjct 373948 GCGTGGGTTCAAATCCCACTTCTGACATTTTTTTAT----AATTTTGTTG 373903 >seq187 Length=45274173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 6/106 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 40772120 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 40772063 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| || || || |||||| Sbjct 40772062 GCGTGGGTTCAAATCCCACTTCTGACATTTTCTTCTTTTTATTTTT 40772017 >seq22 Length=40393389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 39777844 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 39777901 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| |||||| || Sbjct 39777902 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 39777936 >seq145 Length=44152522 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3355216 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3355273 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 3355274 TTCAAATCCCACAGCTGTCAATTT 3355297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556580657253040