Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq146 109 5e-19 seq170 82.4 6e-11 >seq146 Length=1334862 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||| || ||||| | || || |||||||| ||| | ||| |||| | Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 |||| | | | | | || ||| ||| || ||||||||||| |||| ||||| Sbjct 1119928 CGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 1119987 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||| | || |||| || || ||||||||||||||| | |||| | || ||||| || Sbjct 1119988 ACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACAA 1120047 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| || || || || ||| | | || || ||||| Sbjct 1120048 CATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAGGCTTCGTGGTGG 1120095 >seq170 Length=38796167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| ||||| || ||||| | || | |||||||| ||| | ||| ||| | Sbjct 3261367 AAAATGCAGATTTTCGTGAAAACCGTAACTAGAAAAACCATAACCCTAGAAGTCGAATCT 3261308 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 |||| | | | | || ||| ||| || ||||| ||||| || | ||| Sbjct 3261307 TTCGATATAATCGACAACGTGAAAACAAAGATCCAAGACAAGGAAGGAATTTCACCAGAT 3261248 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | || |||| || | ||||||||||||||| | |||| | | ||||| Sbjct 3261247 CAACAACGCCTGATTTTCGCCAGAAAACAATTGGAAGATGGAAGAACTCTCGTAGATTAC 3261188 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||||| | || ||||| ||||| | || || ||||| Sbjct 3261187 AACATTCAGAAAGAATTGAAGCTTCATTTGGTGTTCAGGCTTCGTGGTGG 3261138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422832499673200