Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq58 107 1e-18 seq157 98.7 7e-16 seq1 89.7 4e-13 >seq58 Length=2649046 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || || ||||| ||||| ||| | | Sbjct 1146927 ATGCAAATCTTTGTGAAGACTCTCACCGGGAAGACGATTACTTTGGAAGTTGAAAGCTCG 1146986 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || ||||| || ||| || || || ||| | ||| | |||| Sbjct 1146987 GATACGATCGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 1147046 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || || |||||| ||| |||| ||||||||| Sbjct 1147047 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGTACTTTGGCTGATTACAAT 1147106 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || |||||| |||| | ||||| | ||||| Sbjct 1147107 ATCCAGAAGGAATCCACCCTTCATTTGGTTCTCCGTTTGAGGGGAGG 1147153 Score = 100 bits (110), Expect = 2e-16 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || || || || |||||||| || |||| ||| | | Sbjct 1147610 AATGCAGATCTTTGTTAAGACCTTGACTGGGAAAACCATCACTTTGGAGGTTGAAAGCTC 1147669 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || ||| | | || | ||| || ||| ||||| |||||| | ||||| | Sbjct 1147670 GGACACGATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCACCTG---A 1147726 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| ||||| | ||||||||||| || ||||| || ||| | ||| |||| ||||| Sbjct 1147727 CCAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTTTGGCTGATTA 1147786 Query 22010 CAATATTCAGAAGGAATCTACTCTTCA 22036 ||| ||||||||||| || |||||||| Sbjct 1147787 CAACATTCAGAAGGAGTCCACTCTTCA 1147813 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || ||||| || || ||| |||| ||| | Sbjct 1147155 ATGCAGATTTTTGTCAAGACATTGACTGGCAAGACTATCACCTTGGAGGTGGAGAGTTCC 1147214 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||| ||||| || ||| | || | | || Sbjct 1147215 GATACTATCGACAATGTCAAGGCGAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1147274 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| ||||| || || || || ||| || ||| |||| || ||||| Sbjct 1147275 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGAAGGACTTTGGCTGACTACAAC 1147334 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || |||||||| |||||||||||| |||| | ||||| Sbjct 1147335 ATCCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTT 1147372 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || ||||| || |||| || | | Sbjct 1147383 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGCTCG 1147442 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||| || ||||| |||||| | || | |||| Sbjct 1147443 GACACGATCGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAG 1147502 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| || || || || ||| | ||| | || ||||||||| Sbjct 1147503 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACTCTTGCGGATTACAAT 1147562 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||| ||||| ||||| |||| | ||||| | |||||| Sbjct 1147563 ATCCAAAAGGAGTCTACCCTTCACTTGGTGCTTCGTTTGAGGGGAGGA 1147610 >seq157 Length=426068 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| |||| || || ||||||||| | || ||| | | Sbjct 398057 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAGACCATTACCCTTGAGGTTGAAAGCTCT 398116 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| |||||| || || || || | || | ||||| Sbjct 398117 GACACCATTGACAATGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCAGACCAA 398176 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| |||||||| || ||| ||| | || ||||| ||| Sbjct 398177 CAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTCTAGCTGATTATAAT 398236 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||| ||||| || || |||| Sbjct 398237 ATCCAGAAGGAGTCTACCCTCCACCTGGT 398265 >seq1 Length=34941034 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| ||| | || ||| | || Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||||||| | ||||| |||||| | || | |||| Sbjct 3649624 GACACTATTGACAATGTTAAGACAAAAATTACTGATAAGGAGGGTATCCCACCAGACCAG 3649683 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||| || || ||| | |||||| ||| | || |||||||| Sbjct 3649684 CAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACAAC 3649743 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| || || || || |||| | || ||| | || || Sbjct 3649744 ATCCAAAAGGAGTCCACCCTCCACTTGGTTCTCCGCTTAAGGGGTGG 3649790 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| || ||||| ||| | || Sbjct 3650020 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTCA 3650079 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| | || || || || | || | ||||| Sbjct 3650080 GATACCATTGACAATGTGAAGGCGAAGATTACAGACAAGGAAGGCATTCCAGCTGACCAA 3650139 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| || ||||| || || ||| | || |||| |||||||| Sbjct 3650140 CAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACAAC 3650199 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || ||| | || |||| | ||||| | ||||| Sbjct 3650200 ATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGTTTGAGGGGAGG 3650246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357949140457084