Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq57 140 3e-28 seq146 120 3e-22 seq1 105 6e-18 seq58 95.1 1e-14 seq170 93.3 4e-14 seq180 89.7 4e-13 seq145 89.7 4e-13 seq157 87.8 2e-12 >seq57 Length=33024243 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | || ||| ||||||||||||||| || Sbjct 18658262 GTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCG 18658321 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || ||||| |||||||| || ||||||||||||||||| |||||| ||| Sbjct 18658322 GCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTC 18658381 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| ||||||||| || | ||| | ||||| || || || ||| Sbjct 18658382 ACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTT 18658441 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 18658442 TTCACGAAGATCTGCAT 18658458 >seq146 Length=1334862 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| || || | || || || | ||| |||||||| |||||||||||||| Sbjct 1120097 TACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTG 1120038 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | ||| | |||||| | |||||| || ||| | || || || ||||| || || | Sbjct 1120037 CGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTG 1119978 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||||||||| |||||| ||| | | || | || |||| ||||| | Sbjct 1119977 GAATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCA 1119918 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | ||||| || || || ||||| || ||||||||||| Sbjct 1119917 CTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq1 Length=34941034 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || || | ||| ||||| |||||||| Sbjct 3650216 GTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCCTCAAGCTGTTTACCG 3650157 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||||||||| | ||||||||||| ||||| | |||||| || Sbjct 3650156 GCAAAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCTGTAATCTTCGCCTTC 3650097 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | ||| || |||| || | || ||||| || ||||| Sbjct 3650096 ACATTGTCAATGGTATCTGAGCTTTCAACTTCCAGTGTGATGGTCTTGCCAGTAAGAGTC 3650037 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 3650036 TTCACAAAGATCTGCATGCCT 3650016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTT 114231 ||| || || | || || || ||||| ||||||||||| ||| | ||| ||| ||||| Sbjct 3649773 AACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT-AGAGTCCGACCATCTT 3649715 Query 114232 CAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGG 114291 | | ||| || || || |||| || | || ||||| || || || || || || || | Sbjct 3649714 CCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCAG 3649655 Query 114292 CAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||| |||||| ||| | | |||| ||||| | | |||||| || | ||| | || Sbjct 3649654 TAAT-TTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACCTCAAGGGTGATGGTC 3649596 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| || || || || ||||| ||||||||| Sbjct 3649595 TTGCCAGTAAGGGTCTTGACAAAGATCTGCATG 3649563 >seq58 Length=2649046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||| ||| | ||| || |||||||||||||| || Sbjct 1146667 GTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCAAGTTGTTTTCCG 1146608 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | ||| ||||| || |||||||| ||||| ||||| |||||| ||| Sbjct 1146607 GCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTT 1146548 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || || || | || | || |||||||| || ||| Sbjct 1146547 ACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTT 1146488 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 1146487 TTCACGAAGATTTGCAT 1146471 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||||||||||| || |||||| ||| |||||||| || ||| Sbjct 1147807 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTACGTCCATCCTCAAGTTGCTTTCCA 1147748 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||| || || || || |||||| || Sbjct 1147747 GCAAAGATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTGGCCTTC 1147688 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||| || |||| || | ||||| || |||| || Sbjct 1147687 ACATTATCAATCGTGTCCGAGCTTTCAACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTC 1147628 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1147627 TTAACAAAGATCTGCAT 1147611 >seq170 Length=38796167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| || || || || ||||| | | | ||||||| |||||||||||||| Sbjct 3261136 TACCACCACGAAGCCTGAACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTA 3261195 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | ||| | |||||| | |||||| | ||| | || || || ||||| || || | Sbjct 3261196 CGAGAGTTCTTCCATCTTCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTG 3261255 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||| ||||| |||||| ||| | | || | | ||| ||||||| Sbjct 3261256 AAATTCCTTCCTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTATATCGAAAGATTCGA 3261315 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | ||||| | || | ||||| || ||||||||||| Sbjct 3261316 CTTCTAGGGTTATGGTTTTTCTAGTTACGGTTTTCACGAAAATCTGCAT 3261364 >seq180 Length=370853 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | || ||| ||||||||||||||| || Sbjct 23715 GTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCG 23656 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | || ||||| ||||||| || ||||||||||||||||| Sbjct 23655 GCGAAAATCAGACGTTGTTGGTGTGGTGGAATGCCTTCTTTGTC 23612 >seq145 Length=44152522 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||||||||||||| | |||||| |||||||||||| || || ||| | | Sbjct 3425992 CTTTTTGAATGTTGTAATCGGCAAGAGTACGGTCATCTTCAAGTTGCTTTCCGGCGAATA 3425933 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 | |||||||||||||||| ||||| ||| Sbjct 3425932 TCAGACGCTGTTGGTCCGAGGGAATTCCT 3425904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||||||||||||| | |||||| |||||| ||||| || || ||| | | Sbjct 3408592 CTTTTTGAATGTTGTAATCGGCAAGAGTACGGTCATCTTCGAGTTGCTTTCCGGCGAATA 3408533 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 | |||||||||||||||| ||||| ||| Sbjct 3408532 TCAGACGCTGTTGGTCCGAGGGAATTCCT 3408504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | || ||| ||||||||||||||| || Sbjct 33200744 GTTGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCG 33200685 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | || ||||| ||||||| || |||||||||||||| || Sbjct 33200684 GCGAAAATCAGACGTTGTTGGTGTGGTGGAATGCCTTCTTTATC 33200641 >seq157 Length=426068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | ||| | || ||||| || |||||||| ||||| Sbjct 398968 ACCACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGC 398909 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| | || ||||| || | || || | ||| || || ||||| Sbjct 398908 GAGGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGG 398849 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| ||||| |||||| ||| | | |||| || || | | || || Sbjct 398848 GATCCCTTCCTTGTCCTGTATCTTTGTTTTCACATTATCAATAGTATCCGAGCTCTCCAC 398789 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||| || || || ||||| || || ||||||||||| Sbjct 398788 CTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419928324864552