Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq146 150 4e-31 seq58 138 3e-27 seq157 129 1e-24 seq145 102 2e-16 seq96 96.9 8e-15 seq257 93.3 1e-13 seq3 87.8 4e-12 >seq146 Length=1334862 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || | |||| ||| |||||| || || || || || ||| Sbjct 1120095 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCG 1120036 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| ||||||||||| ||||| ||||| || |||||| ||| Sbjct 1120035 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGA 1119976 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || ||||| || | ||||||||| || || | |||| ||||| ||| Sbjct 1119975 ATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACT 1119916 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || || || || || || || || || ||||| ||||||||| || Sbjct 1119915 TCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATTCTG 1119865 >seq58 Length=2649046 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || |||||||| || || |||||||| | || ||||| |||||| Sbjct 1146889 TCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCAGCGAAG 1146830 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || || ||| || ||||| || || || ||||| ||||| ||||| Sbjct 1146829 ATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACGTTG 1146770 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| |||| ||| ||||| || ||||| ||||| || || |||||||||||| Sbjct 1146769 TCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACG 1146710 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1146709 AAGATCTGCAT 1146699 Score = 123 bits (136), Expect = 6e-23 Identities = 147/197 (75%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||||||| || || |||||||| | ||||||||| || ||| Sbjct 1146661 TCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAG 1146602 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | ||| ||||| |||| || |||||||| || || ||||| || || || ||| Sbjct 1146601 ATTAAACGTTGTTG---ATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTTACG 1146545 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || ||||| || || ||||| ||||| || || Sbjct 1146544 TTGTCGATGGTGTCGGAACTC---TCAACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTT 1146488 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 1146487 TTCACGAAGATTTGCAT 1146471 Score = 105 bits (116), Expect = 2e-17 Identities = 143/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || | || | ||| || || | || || || |||||| Sbjct 1147345 TCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAG 1147286 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| || ||||| ||||||||||||||||| || || Sbjct 1147285 ATCAACCTCTGCTGA---TCTGGGGGAATACCTTCCTTATCCTGGATTTTCGCCTTGACA 1147229 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || |||| |||| ||| || || || | ||||| ||||| || |||| ||| Sbjct 1147228 TTGTCGATAGTATCGGAACTC---TCCACCTCCAAGGTGATAGTCTTGCCAGTCAATGTC 1147172 Query 288457 TTGACGAATATCTGCAT 288473 ||||| || |||||||| Sbjct 1147171 TTGACAAAAATCTGCAT 1147155 Score = 89.7 bits (98), Expect = 1e-12 Identities = 152/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || | ||||| ||| ||| || |||||||| || || || | || || || ||| Sbjct 1147138 AGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAAAGTACGGCCATCT 1147079 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || ||||||| | ||| || ||||| || ||||| || Sbjct 1147078 TCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGG---TCTGGAGGAATACCTTCCTTG 1147022 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTCTACTTCGAGCGTG 288435 ||||| || || || || || || || || | ||| ||| ||| ||||| | || Sbjct 1147021 TCCTGAATCTTAGCCTTAACATTGTCGATCGTATC---CGAGCTTTCAACTTCCAAAGTA 1146965 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| |||||||| || || || ||||| Sbjct 1146964 ATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 >seq157 Length=426068 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||||| || ||| || || || ||||| || ||| Sbjct 398967 CCACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCG 398908 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| || || || || || || ||||| | ||| ||| ||||| Sbjct 398907 AGGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGA---TCTGGA 398851 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||| ||||| || ||||| || || | |||||| || || |||| ||| |||| Sbjct 398850 GGGATCCCTTCCTTGTCCTGTATCTTTGTTTTCACATTATCAATAGTATCCGAGCTC--- 398794 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| || || |||||||| ||||| |||||||| Sbjct 398793 TCCACCTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || || ||||||||||| || || || Sbjct 398511 CCACCACGAAGACGAAGGACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCC 398452 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || | ||| || || || ||||| || | ||||||| |||| Sbjct 398451 AAAGTACGACCATCCTCAAGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGG 398392 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || || || || || || ||||| || || || | ||| |||| || Sbjct 398391 ATACCTTCCTTGTCTTGTATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTC---TCA 398335 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || || ||||||||||| || || ||||| Sbjct 398334 ACCTCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||||||||| || || || || || || || || | ||||||||| || ||| Sbjct 398247 TCCTTCTGGATATTATAATCAGCTAGAGTACGACCATCCTCGAGTTGTTTTCCAGCAAAG 398188 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | |||||| ||| || ||||| || || || ||||| || || || || Sbjct 398187 ATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGAATTTTAGCCTTAACATTG 398128 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| ||| || || || || || |||||||| || || || ||| Sbjct 398127 TCAATGGTGTCAGAGCT---TTCAACCTCAAGGGTAATGGTCTTCCCTGTTAGGGTTTTG 398071 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 398070 ACAAAGATTTGCAT 398057 Score = 93.3 bits (102), Expect = 1e-13 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || ||||||| || || || || ||||| || | Sbjct 398059 CATG-CCACCACGGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGAATATTGTAAT 398001 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || ||||| | ||| || || || ||||||||||| || || | Sbjct 398000 CAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAAGATCAGACGTTGCTGGTCAG 397941 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCG 288418 || || || || || || || || || || || || || || || | ||| ||| Sbjct 397940 GAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAACTC- 397882 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||||||||| || |||| ||||| || || || ||||| Sbjct 397881 --TCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCAT 397829 >seq145 Length=44152522 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || |||| || ||||| ||||| || || || || Sbjct 33200774 CCACCTCTGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCA 33200715 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||||||| ||||| |||||||| ||||| ||| Sbjct 33200714 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTGGA 33200655 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 || ||||||||||| ||||| || |||||||| || || || Sbjct 33200654 ATGCCTTCTTTATCTTGGATCTTTGCTTTCACATTGTCGAT 33200614 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 15/221 (7%) Strand=Plus/Plus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| || || | ||| || ||||||| || ||| || || || ||||| ||||| | Sbjct 18651144 CACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCGGCAA 18651203 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG-- 288365 | || || || ||||| || || || || || || ||||| | ||| ||| ||||| Sbjct 18651204 GGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGA---TCTGGAG 18651260 Query 288366 -GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATT 288421 ||| ||||| || ||||| || || | ||| || || || |||| ||| |||| | Sbjct 18651261 GGATCCCTTCCTTGTCCTGTATCTTTGTTTTAACATTATCAATAGTATCCGAGCTC---T 18651317 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || || || ||||||||||| | | | |||||| ||| Sbjct 18651318 CAACCTCCAGAGTGATCGTCTTTCAGTT---AGTCTTCACG 18651355 >seq96 Length=52461754 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || || || ||||| || ||||| ||||||||||| ||||| Sbjct 45648253 TCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTC-AATTGTTTTCCGGCGAAA 45648311 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| ||||| ||| || |||||||| || ||||| || |||||||| || Sbjct 45648312 ATCAGACGTTGTTGGTGTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTG 45648371 Query 288403 TCTAT 288407 || || Sbjct 45648372 TCGAT 45648376 >seq257 Length=328955 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 15/221 (7%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| || || | ||| || ||||||| || ||| || || || ||||| ||||| | Sbjct 268824 CACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCGGCAA 268765 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG-- 288365 | || || || ||||| || || || || || || ||||| | ||| ||| ||||| Sbjct 268764 GGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGA---TCTGGAG 268708 Query 288366 -GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATT 288421 ||| ||||| || ||||| || || | ||| || || || |||| ||| |||| | Sbjct 268707 GGATCCCTTCCTTGTCCTGTATCTTTGTTTTAACATTATCAATAGTATCCGAGCTC---T 268651 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || || || ||||||||||| | | | |||||| ||| Sbjct 268650 CAACCTCCAGAGTGATCGTCTTTCAGTT---AGTCTTCACG 268613 >seq3 Length=4817789 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 72702 AGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGAT 72761 || |||||||||| |||| ||| || ||||| ||||||||||||||||| |||||||| Sbjct 182562 AGGGATTGGGGATTTGCGGGGGACTATGTAGAGGCAATGTGGTTGATGCTTCAACAAGAG 182621 Query 72762 ACTCCGGATGACTATGTGATTGCAAC 72787 | || |||||||||||| | || || Sbjct 182622 AAGCCTGATGACTATGTGGTAGCCAC 182647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179046108996788