Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq37912 91.5 2e-13 seq127 87.8 2e-12 >seq37912 Length=1164 Score = 91.5 bits (100), Expect = 2e-13 Identities = 189/276 (68%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 10875 CAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG- 10933 ||||||| |||||||| || || ||||||| || ||||||||||| || || || Sbjct 1164 CAAAGCCGTCCATCTCGACCAGCAGCTGATTGAGCGTCTGTTCGCGTTCGTCGTTGCCGC 1105 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 || | || || | ||| || ||||| ||||| |||||||||||||| | || Sbjct 1104 CGCCGA-GGCCGGCGCCGCGCTGACGGCCGACTGCGTCGATTTCATCGATGAAGATAATG 1046 Query 10994 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 |||||| || | ||| || || || || || || | | || ||||| || Sbjct 1045 CACGGTGCATGCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGCGCCGCGCCGACGCCG 986 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112 || ||||| || || || | || ||| | || | || ||| || || |||| ||| || Sbjct 985 ACGAACATCTCGACGAAGTCGGAACCGG-AGATCGAGAAGAACGGCACCTTGGCTTCGCC 927 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCC 11148 |||||||| |||||| |||||||| || || || Sbjct 926 GGCGATGGCCTTGGCGAGCAGGGTCTTGCCGGTACC 891 >seq127 Length=60962716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 ||||| || || ||||||||||||||||||| || || | |||||||| ||| Sbjct 7119255 GGAAGAGCAATAGACGCCAGATTACACACAGCAGTTTCTGTTGGACTGGTGTACTCAATA 7119314 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || ||||||||||||||| |||||| || || | ||||| ||||| ||| | Sbjct 7119315 ATCTCAGTACACAAATTTGAAGACTTAATTGTACCAAGGTTCTGCTGATTGCTCTTCCGG 7119374 Query 114584 TTACACGCATCCTTGTAA 114601 ||||| | |||| ||||| Sbjct 7119375 TTACAGGAATCC-TGTAA 7119391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597053086337680