Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq58 114 1e-20 seq157 95.1 1e-14 seq57 86.0 7e-12 >seq1 Length=34941034 Score = 123 bits (136), Expect = 3e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | ||||| ||||| || ||||||||||| || || ||||| Sbjct 3650474 CCACCTCTGAGACGGAGGACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCT 3650415 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 |||||||| | || || |||||||| || ||||| ||||||| ||||||||| ||||| Sbjct 3650414 AGAGTCCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGA 3650355 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||||||||| |||| ||| || | | | | || || ||| ||| Sbjct 3650354 ATTCCCTCCTTGTCTGTGATCTTTGCCTTCACATTGTCAATAGTATCCGAGCT---TTCA 3650298 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 3650297 ACTTCAAGTGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 Score = 109 bits (120), Expect = 6e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | |||| ||||| ||| |||||| || || |||||||||||| Sbjct 3650246 CCTCCCCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCC 3650187 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | |||| | || || ||||| ||||| || || ||||||| ||| ||||| ||||| Sbjct 3650186 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGA 3650127 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || |||||||| | || || || | | | | || || ||| ||| Sbjct 3650126 ATGCCTTCCTTGTCTGTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCT---TTCA 3650070 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 3650069 ACTTCCAGTGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| |||||||||||||| |||||||| ||| | || || | |||||| ||||| || Sbjct 3650667 CTCCTTCTGAATATTGTAATCTGCCAGAGTTCGCCCATCCTCCAACTGCTTCCCAGCAAA 3650608 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||||| |||||| || | || | | ||||||||| ||| | || || || | Sbjct 3650607 GATGAGTCTCTGCTGATCTGGAGGGATACCTTCCTTGTCC-TGAATCTTGGTCTTCACAT 3650549 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | ||||| || || || || || |||| Sbjct 3650548 TATCAATTGTATCAGAACTC---TCCACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCT 3650492 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 3650491 TCACAAAGATCTGCAT 3650476 >seq58 Length=2649046 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | |||||| || | || ||||||||| ||||||||||| || Sbjct 1147609 CCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 1147550 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | | || || |||||||||||||| || || | | ||||||||| | || Sbjct 1147549 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 1147490 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||| ||| ||| ||| |||| | | | |||||| |||| || Sbjct 1147489 ATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTC---TCA 1147433 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || | ||||| ||||| || ||||| Sbjct 1147432 ACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 105 bits (116), Expect = 7e-18 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||| || || || ||| |||| || |||||||| |||||||| Sbjct 1146890 CTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCAGCGAA 1146831 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | |||||||| | ||| | || ||||||| | ||| |||| | ||||| || Sbjct 1146830 GATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATTTTGGCTTTGA-CG 1146773 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | || ||| ||| || || | ||||| || ||||| || || ||||| Sbjct 1146772 TTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTG 1146713 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 1146712 ACGAAGATCTGCAT 1146699 Score = 105 bits (116), Expect = 7e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || ||||| | |||||||| | ||| ||||| || |||||||||||||| Sbjct 1147154 ACCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGC 1147095 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || |||||||||||||| || || | | ||||||||| | || Sbjct 1147094 CAAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 1147035 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| | || | | | | | | | | ||| || ||| || Sbjct 1147034 AATACCTTCCTTGTCC-TGAATCTTAGCCTTAACATTGTCGATCGTATCCGAGCT---TT 1146979 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | || || || || || || || ||||| |||||||||||||| Sbjct 1146978 CAACTTCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || ||||| | ||||||||| | || |||||| || || ||||| ||||| Sbjct 1147382 ACCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 1147323 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | || || ||||||||||||||||| || | | |||||| || | || Sbjct 1147322 CAAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGG 1147263 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTC 42157 | | ||||| ||| |||||| |||| | | | || ||| ||| || Sbjct 1147262 AATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTC---TC 1147206 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 1147205 CACCTCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||||| ||| || | || || || ||||| ||||| || Sbjct 1147802 CTCCTTCTGAATGTTGTAATCAGCCAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAA 1147743 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | | ||||||||| | ||| | | |||||| ||| ||| | || | || | Sbjct 1147742 GATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCC-TGAATCTTGGCCTTCACAT 1147684 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| ||| || || | ||||||||||| || || | |||| Sbjct 1147683 TATCAATCGTGTCCGAGCT---TTCAACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCT 1147627 Query 42193 TTACAAAGATTTGCATT 42209 | |||||||| |||||| Sbjct 1147626 TAACAAAGATCTGCATT 1147610 >seq157 Length=426068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||||||||||||||| || || || | || || || |||||||| || || Sbjct 398020 CTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAA 397961 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | || | || |||||||| | ||| | |||| | | | | Sbjct 397960 GATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGT-CTTGAATCTTTGCCTTAACAT 397902 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| |||| ||||| || || || || | |||| Sbjct 397901 TGTCAATTGTATCAGAACTC---TCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCT 397845 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 397844 TAACAAAGATTTGCAT 397829 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||| |||||||| ||||| || | || || || || || ||||| || Sbjct 398248 CTCCTTCTGGATATTATAATCAGCTAGAGTACGACCATCCTCGAGTTGTTTTCCAGCAAA 398189 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||| ||||| | ||| | | |||||||| ||| |||| | | | | | Sbjct 398188 GATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCT-TGAATTTTAGCCTTAACAT 398130 Query 42137 CGCCACCG-TGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | || | |||| ||| ||| || || | || ||||| || || ||||| || | Sbjct 398129 TGTCAATGGTGTCAGAGCT---TTCAACCTCAAGGGTAATGGTCTTCCCTGTTAGGGTTT 398073 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 398072 TGACAAAGATTTGCAT 398057 >seq57 Length=33024243 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||||||||| || || || | || || || || || || ||||| Sbjct 18658267 CTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAA 18658326 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || || ||||| | ||| | || || ||||| ||| ||| ||| | | Sbjct 18658327 AATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATT 18658386 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | || |||||||| |||||||| || || || Sbjct 18658387 GTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCAC 18658446 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 18658447 GAAGATCTGCATCTT 18658461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542939523220640