Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq146 131 2e-25 seq57 123 2e-23 seq157 122 9e-23 seq58 116 4e-21 seq170 104 2e-17 seq180 96.9 3e-15 seq1 96.9 3e-15 seq145 91.5 1e-13 >seq146 Length=1334862 Score = 131 bits (144), Expect = 2e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| | |||| ||| |||||||| ||||||||||||||||| Sbjct 1120096 ACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGC 1120037 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| | || || ||||| |||| || || || || || || || Sbjct 1120036 GAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGG 1119977 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| ||||| || ||| || || || | |||||| | ||||| Sbjct 1119976 AATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCAC 1119917 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAAT 64452 ||||| |||| ||| || || || | ||||| |||||||| |||||| | | ||| Sbjct 1119916 TTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATTCTGAGAAT 1119860 >seq57 Length=33024243 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||||| ||||| || ||||||||||| || | ||||| | || Sbjct 18658246 AAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATC 18658305 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || || ||||| |||| || || || ||||| || ||||| |||||||| || Sbjct 18658306 TTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTC 18658365 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| || | || || || || ||||||| |||| || Sbjct 18658366 TTGGA-TCTTTGCTTTCACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGG 18658424 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || || || | ||||| ||||| || ||||| || Sbjct 18658425 TTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 18658461 >seq157 Length=426068 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || || || || || |||||||||||||| | || || |||| Sbjct 398724 AGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCCAATGTACGACCGTCC 398665 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || |||| |||||||| || || || || || || ||| Sbjct 398664 TCGAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCT 398605 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 ||||| ||| ||| ||| || | |||||| | || || || | ||| | |||| Sbjct 398604 TGTATCTTTGCCTTCACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTC 398545 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| || |||||||||||||| Sbjct 398544 TTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 398513 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||||| || || || ||||| || ||||||||||| | || || | || Sbjct 398497 AAGGACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCCAAAGTACGACCATC 398438 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| ||||| |||||| | ||||||| ||| || || || || || ||||| || || Sbjct 398437 CTCAAGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCTTCCTTGTC 398378 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 |||||| || ||| ||| || | |||||| | || || || | ||| | ||| Sbjct 398377 TTGTATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCAACCTCCAAAGTAATGGT 398318 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | ||| || || || |||||||| Sbjct 398317 CTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 >seq58 Length=2649046 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || ||||| |||||||| || |||| || || ||||| Sbjct 1146682 AGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCT 1146623 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || |||||| | || | || || || || |||||||||||||| || ||| Sbjct 1146622 TCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCT 1146563 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| |||||| || | || || || || || | ||||| |||| Sbjct 1146562 TGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGTC 1146503 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||||| ||||| |||||||| Sbjct 1146502 TTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | |||||| | |||| || || || ||||| || |||||||| || Sbjct 1147609 CCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 1147550 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | | || ||||||||||| || ||| |||| | || ||||||||| || ||| Sbjct 1147549 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 1147490 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || ||| ||| ||| || | || || | || || Sbjct 1147489 ATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAACC 1147430 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| |||||||| || || || ||||| ||||| Sbjct 1147429 TCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | |||||| | ||||| || || || || || |||||||| || || Sbjct 1147382 ACCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 1147323 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | || ||||||||||| || || | || | || |||||| || || || Sbjct 1147322 CAAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGG 1147263 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || ||||| ||| ||| || | ||||| ||||| Sbjct 1147262 AATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCAC 1147203 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| ||||| || || || ||||| ||||| Sbjct 1147202 CTCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || |||||||||||||| || | || || | || Sbjct 1147822 AGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTACGTCCATCC 1147763 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | || ||||||||| || ||||| || || || || Sbjct 1147762 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCC 1147703 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | ||| | ||| Sbjct 1147702 TGAATCTTGGCCTTCACATTATCAATCGTGTCCGAGCTTTCAACCTCCAAAGTGATGGTT 1147643 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || ||||| || || || || || |||||| Sbjct 1147642 TTCCCAGTCAAGGTCTTAACAAAGATCTGCATT 1147610 >seq170 Length=38796167 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || | ||| | ||||| | || ||||||| ||||||||||||||| | Sbjct 3261137 ACCACCACGAAGCCTGAACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTAC 3261196 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| | || || | ||| |||| || || || || || || | Sbjct 3261197 GAGAGTTCTTCCATCTTCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTGA 3261256 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || ||| || || || | | |||| | || || Sbjct 3261257 AATTCCTTCCTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTATATCGAAAGATTCGAC 3261316 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAAT 64452 ||||| |||| ||| || | || | ||||| |||||||| |||||||| ||||| Sbjct 3261317 TTCTAGGGTTATGGTTTTTCTAGTTACGGTTTTCACGAAAATCTGCATTTTGATAAT 3261373 >seq180 Length=370853 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||| ||||| || ||||||||||| || | ||||| | ||| Sbjct 23730 AGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCT 23671 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || ||||| |||| || || || |||| || ||||| |||||||| ||| Sbjct 23670 TCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTGGAATGCCTTCTTTGTCT 23611 Query 64352 TGTATTTTTTGCTTT 64366 || | | |||||||| Sbjct 23610 TGGA-TCTTTGCTTT 23597 >seq1 Length=34941034 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || |||| ||||| || || ||||| ||||||||||| Sbjct 3650703 ACCACCGCGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATATTGTAATCTGC 3650644 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | || || | |||||| || ||| | ||||| | |||||| || ||||| Sbjct 3650643 CAGAGTTCGCCCATCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGATCTGGAGG 3650584 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| ||| || | ||||||| ||||| Sbjct 3650583 GATACCTTCCTTGTCCTGAATCTTGGTCTTCACATTATCAATTGTATCAGAACTCTCCAC 3650524 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || || || || ||||| Sbjct 3650523 CTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 3650476 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||||||||| || || || | || || | || || |||||||| || Sbjct 3650444 GTTGATTCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCCTCCAGCTGCTTCCCC 3650385 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| | ||||||||| | |||||||| || || ||| || ||| ||| Sbjct 3650384 GCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCTGTGATCTTTGCCTTC 3650325 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | || ||||| | || | ||||||||| || | ||| Sbjct 3650324 ACATTGTCAATAGTATCCGAGCTTTCAACTTCAAGTGTGATGGTCTTGCCAGTGAGAGTC 3650265 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 3650264 TTCACGAAGATCTGCAT 3650248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | ||| || || || | || || || || || ||||||||||| || Sbjct 3650246 CCTCCCCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCC 3650187 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | || |||||||| || |||||| | ||||| | ||| ||||| | ||| Sbjct 3650186 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGA 3650127 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTG-CTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || |||| | || | ||| ||| || | ||||| | || || Sbjct 3650126 ATGCCTTCCTTGTC-TGTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAAC 3650068 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||| || | ||| || || || || ||||| Sbjct 3650067 TTCCAGTGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 >seq145 Length=44152522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || ||||| || ||||||||||| || | ||||| | ||| Sbjct 33200759 AGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCT 33200700 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || ||||| |||| || || || |||| || ||||| |||||||| ||| Sbjct 33200699 TCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTGGAATGCCTTCTTTATCT 33200640 Query 64352 TGTATTTTTTGCTTT 64366 || | | |||||||| Sbjct 33200639 TGGA-TCTTTGCTTT 33200626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499393441192240