Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq39402 102 1e-16 seq31737 87.8 3e-12 seq27395 84.2 3e-11 >seq39402 Length=1059 Score = 102 bits (112), Expect = 1e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 41379 AGCAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGC 41438 |||| || || |||||||| | || ||||||||||| || | ||| ||||| || | | Sbjct 764 AGCACCTGGGAACGCTGGGAACGGGTAACCACTTCATCGAGATCTGCCTGGACGAG-CAC 822 Query 41439 AAGA-CGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGT 41497 ||| ||||||| | |||||||| |||||||||||| ||||| ||| ||||||| Sbjct 823 CAGAGCGTGTGGGTGATGCTGCACTCCGGTTCGCGCGGGGTGGGGAACGCCATCGGCACC 882 Query 41498 CACTACATCGAGCGTGCGCAGAAGGAGTGCGGCATGTGGCACAGCAGCCTGCCGCACAAC 41557 || | |||||||| || |||| || || ||| || ||| |||||| | || Sbjct 883 CATTTCATCGAGCTGGCCAAGAAAGACGCCGAGATGAACCAGCGCAACCTGCCCGATAAA 942 Query 41558 GATCTCGCGTTCTTC 41572 || || |||| |||| Sbjct 943 GACCTGGCGTACTTC 957 >seq31737 Length=519 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 186529 TGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAACC 186588 ||||| |||||| |||||| |||||| ||||||||| |||| || |||||||||| || Sbjct 161 TGGTCGGAGTGAAAGGATTTGAACCTTCGACCCCCTCGTCCCGAACGAGGTGCGCTA-CC 103 Query 186589 AGACTGCGCTACACTCGGTAAACAG 186613 || ||||||||||||| || | ||| Sbjct 102 AGGCTGCGCTACACTCCGTCACCAG 78 >seq27395 Length=556 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/82 (85%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 186527 GATGGTCCGAGTGAGAG-GATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTA 186585 ||||||| ||||| ||| ||||||||| ||||||| ||| ||||||| ||| ||||||| Sbjct 164 GATGGTCGGAGTG-GAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTA 222 Query 186586 ACCAGACTGCGCTACACTCGGT 186607 |||| ||||||||||||| || Sbjct 223 -CCAGGCTGCGCTACACTCCGT 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739515780844400