Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_011270.1 Length=154906 Score E Sequences producing significant alignments: (Bits) Value seq9315 91.5 1e-13 seq6003 86.0 6e-12 seq5135 86.0 6e-12 seq27016 82.4 8e-11 >seq9315 Length=809 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 91905 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91964 |||||||||| |||| |||| ||||||||| ||| ||||| ||| ||||||||||| | Sbjct 667 CGGGGTGTAGCTCAGCTTGGTAGAGCGCTTCGTTCGGGACGAAGAGGTCGCAGGTTCAAG 608 Query 91965 TCCTGTCACCCCGAC 91979 ||||||||||||||| Sbjct 607 TCCTGTCACCCCGAC 593 >seq6003 Length=879 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 91905 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91964 |||||||||| ||||| ||| |||||||| ||| ||||| || |||||||||||||| Sbjct 521 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 462 Query 91965 TCCTGTCACCCCGAC 91979 ||||||| ||||||| Sbjct 461 TCCTGTCTCCCCGAC 447 >seq5135 Length=905 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 91905 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91964 |||||||||| ||||| ||| |||||||| ||| ||||| || |||||||||||||| Sbjct 697 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 638 Query 91965 TCCTGTCACCCCGAC 91979 ||||||| ||||||| Sbjct 637 TCCTGTCTCCCCGAC 623 >seq27016 Length=551 Score = 82.4 bits (90), Expect = 8e-11 Identities = 127/172 (74%), Gaps = 12/172 (7%) Strand=Plus/Plus Query 113595 CCAAGCCCAA-GCCCTGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTC 113653 ||||| |||| | |||| || ||| |||||||| || |||| || ||| |||||||| Sbjct 371 CCAAGGCCAACGGTGTGCCGGT-CGGTCCGGGCCGGGGTTCCGGCGCTGGTTCGCTGGTG 429 Query 113654 ACCTACGTCA-TGGGCATCACCTCGATC--GACCCGATCAAGTACGACCTGATGTTCGAG 113710 | || ||| ||||||| ||| |||| || ||| | |||| ||| || |||||||| Sbjct 430 GCGTAT-TCACTGGGCATTACC--GATCTTGATCCGCTTGAGTATGACTTGCTGTTCGAG 486 Query 113711 CGCTTCATCAACCCGGACC--GCCCCGACTTCCCCGACATCGACGTCGACTT 113760 |||||| | || ||||| | | ||| | |||||| ||||| ||||||| Sbjct 487 CGCTTCCTGAATCCGGAACGGGTTTCGA--TGCCCGACTTCGACATCGACTT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495321890518560