Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq18444 338 7e-88 seq2563 93.3 4e-14 seq20944 89.7 5e-13 seq16660 87.8 2e-12 seq39619 86.0 7e-12 seq34964 86.0 7e-12 seq159 86.0 7e-12 seq12128 84.2 2e-11 seq56 82.4 8e-11 >seq18444 Length=649 Score = 338 bits (374), Expect = 7e-88 Identities = 454/623 (73%), Gaps = 13/623 (2%) Strand=Plus/Plus Query 156079 ACCATGCGGGTGTTCACCGGCCTGACGATGCTGGACACCATCCAGGGCACCGTCGGCGCG 156138 ||||| || || |||||||||||||| |||| |||||||||||| ||||||| | Sbjct 34 ACCATCCGCGTCTTCACCGGCCTGACACTGCTCGACACCATCCAGAATGGCGTCGGCACC 93 Query 156139 GTCTCGCTCATCCCGGACGCCATCACCCCGCACGAGGAGGCGGTGTACACCAACATCGCG 156198 ||| || || | || | |||||||| || || |||||| |||||||| | Sbjct 94 GTCCGCCTGATGGCCGATGTGCAGACCCCGCATGAAGAAGCGGTGCTGTCCAACATCTCC 153 Query 156199 TTCATGGAGAGCG-TGCACGCACGCAGCTACTCGAACATCTTCTCGACGCTGTGCTCCAC 156257 |||||||| |||| | || || ||| ||| ||| ||||| ||||| ||||| || || Sbjct 154 TTCATGGA-AGCGGTCCATGCCCGCTCCTATTCGTCGATCTTTTCGACCCTGTGTTCGAC 212 Query 156258 CAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAGAACGCCAACCTGCAGAAGAAGGC 156317 || |||||| ||| | |||||| |||||||| ||| ||| ||| ||||||| Sbjct 213 GCCCGATGTCGACGACGCCTATCGCTGGAGCGAGGAGAATGCCTTCCTCCAGCAGAAGGC 272 Query 156318 TGA----GATCGTGCTCAGCTACTACAACGGTGACGACCCGCTC-AAGCGCAAGGTCGCC 156372 || |||| || ||| | || || | | |||| |||| ||| ||||||||| Sbjct 273 -GACGCTGATCATG---AGCCAGTATGACAGCGGCGACTCGCTTGAAGAAGAAGGTCGCC 328 Query 156373 TCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTACCTGCCGATGTTCTGGTCG 156432 || | || || ||||||||||||| ||||||||||||||| |||| ||||||| Sbjct 329 TCGGTCTTCCTCGAAAGCTTCCTGTTCTATTCCGGCTTCTACCTGCCCATGTACTGGTCG 388 Query 156433 TCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGCTCATCATCCGGGACGAGGCC 156492 || | |||||| ||||| ||||||||| | ||||| ||||||||| |||||||||| Sbjct 389 AGCCGCGCCAAGCTGACCAATACCGCCGACCTCATCCGCCTCATCATCAAGGACGAGGCC 448 Query 156493 GTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCTGGAGAAGGAGACCAAGGCC 156552 ||||||||||| || |||||||||||||||||| | | ||| || | ||| Sbjct 449 GTGCACGGCTATTATATCGGCTACAAGTTCCAGCGCGAGGTTGAGCGCCTCCCCGAAGCC 508 Query 156553 CGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTGTTCGAGCTGTTCGACAACGAG 156612 ||| |||||||| ||||||||| ||| || || || |||| || | ||||||||| Sbjct 509 CGCAAGCAGGAAATCAAGGACTTTGCCTTCGATCT-CTCCTCGA-CTCTACGACAACGAA 566 Query 156613 CAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGACCGAGGACGTGAAGAAGTTC 156672 | |||||| |||||||||| |||| | |||| |||| ||||| ||||| ||| Sbjct 567 GCGCGCTACACCGAGGACCTCTATGACGGCGTGGGCCTTGCCGAAGACGTCAAGAAATTC 626 Query 156673 CTGCGGTACAACGGCAACAAGGC 156695 |||| ||||||| ||||||||| Sbjct 627 CTGCACTACAACGCCAACAAGGC 649 >seq2563 Length=982 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 556 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 497 Query 92675 CCCACTCCCGCCAC 92688 || || ||||| || Sbjct 496 CCTACCCCCGCAAC 483 >seq20944 Length=626 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 426 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 485 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 486 CCTGCCCCCGCAAC 499 >seq16660 Length=685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 92835 CATGTTCCTTGGGGGCGACTGATCCTTGCAAGATCGGTGAGGTGGGTTCGATTCCCAT 92892 |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 586 CATGTTCCCAGGGGGCGACTGATCCTTGCAAGATCGGTGAGATGGGTTCGACTCCCAT 643 >seq39619 Length=1043 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||| |||| ||| ||||| ||| Sbjct 412 GCGGGGTGGAGCAGCCAGGTAGCTCGCGAGGCTCATAACCTCGAGGTCGTCGGTTCGAAT 353 Query 92675 CCCACTCCCGCCACT 92689 || | ||||||||| Sbjct 352 CCGGCCCCCGCCACT 338 >seq34964 Length=1610 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 |||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||||| Sbjct 563 GCGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAAT 504 Query 92675 CC 92676 || Sbjct 503 CC 502 >seq159 Length=432747 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 |||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||||| Sbjct 322666 GCGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAAT 322725 Query 92675 CC 92676 || Sbjct 322726 CC 322727 >seq12128 Length=757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||| | | ||||||||| Sbjct 534 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCCTAGGTTCAAAT 475 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 474 CCTAGCCCCGCAAC 461 >seq56 Length=649304 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 |||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||||| Sbjct 539346 GCGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAAT 539405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526333481509920