Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq58 116 4e-21 seq157 100 3e-16 seq57 96.9 3e-15 seq146 82.4 8e-11 seq1 82.4 8e-11 >seq58 Length=2649046 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | || | ||| | ||||||||||||| |||||||||||| Sbjct 1146697 CCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1146638 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || |||||||| |||| | |||||| ||| ||||| || ||||| Sbjct 1146637 AGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGA 1146578 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| |||| | || | |||||||| ||| ||| Sbjct 1146577 ATTCCTTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACC 1146518 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || || ||||| || || || ||||| Sbjct 1146517 TCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 >seq157 Length=426068 Score = 100 bits (110), Expect = 3e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | |||||||||| ||||| ||||| || | || || || |||||||| Sbjct 398032 ATGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTG 397973 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 ||||||| | |||| ||||| || ||||| ||||| || || || ||||| ||| | | Sbjct 397972 CTTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT-TGAATCT 397914 Query 138531 TTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 ||| |||| |||| | | || || | ||||||||||| || | ||| |||||| Sbjct 397913 TTGCCTTAACATTGT-CAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCA 397855 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || || ||||| || ||||| Sbjct 397854 GTCAAGGTCTTAACAAAGATTTGCAT 397829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | | ||||||||||| || ||||| || | Sbjct 398511 CCACCACGAAGACGAAGGACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCC 398452 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| ||||| ||||||| | |||| || | |||||| || || || Sbjct 398451 AAAGTACGACCATCCTCAAGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGG 398392 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| || || || | |||| || | || || | ||| || Sbjct 398391 ATACCTTCCTTGTCTTGTATCTTAGCCTTCACATTG-TCAATCGTATCAGAGCTCTCAAC 398333 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| ||||| || ||||| || ||||| Sbjct 398332 CTCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || || || || || ||| | |||||| |||||||||||||| || | Sbjct 398250 GACTCCTTCTGGATATTATAATCAGCT-AGAGTACGACCATCCTCGAGTTGTTTTCCAGC 398192 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| || | ||||||||| || || || ||||| ||||| ||| |||| | ||| Sbjct 398191 AAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTC-TTGAATTTTAGCCTTAA 398133 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | || ||||| | || | || || || || || ||| Sbjct 398132 CATTG-TCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTTCCCTGTTAGGGTT 398074 Query 138598 TTTACAAAAATCTGCATG 138615 || ||||| || |||||| Sbjct 398073 TTGACAAAGATTTGCATG 398056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | ||| | | |||| ||||| |||||||| || || Sbjct 398967 CCACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCG 398908 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | || ||||||| | | || || | ||| || || ||||| Sbjct 398907 AGGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGG 398848 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || | |||||||| | | || | || || | |||||| Sbjct 398847 ATCCCTTCCTTGTCC-TGTATCTTTGTTTTCACATTATCAATAGTATCCGAGCTCTCCAC 398789 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || ||||| ||||| || || ||||||||||| Sbjct 398788 CTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 >seq57 Length=33024243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | ||| | || | | ||||| || || |||||||| || | Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAG-C 18658290 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| || || |||||||| |||| | || ||||| |||||||| || | Sbjct 18658291 A-AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTG 18658349 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCC 138564 | || ||||||||||| ||| ||| ||| | |||| || | |||||||| || || Sbjct 18658350 GAATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTG-TCGATGGTGTCGGAGGATTCG 18658408 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | |||||||| || || ||||| || || |||||||| Sbjct 18658409 ACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458 >seq146 Length=1334862 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || ||||||||||| || | ||| | || || | |||||| |||| Sbjct 1120064 TTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCCATCTTCCAATTGTTTTCCGG 1120005 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || || || ||||| || || || || ||||||||||| ||| ||| ||||| Sbjct 1120004 CGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTT-GTTTTC 1119946 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | |||| | | || |||| || ||||| || | || | ||||| ||||| || || Sbjct 1119945 ACGTTGT-CGATTGTATCGGAAGATTCCACTTCTAGGGTTATGGTTTTTCCAGTTAGGGT 1119887 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| || ||||||||||| Sbjct 1119886 TTTCACGAAAATCTGCAT 1119869 >seq1 Length=34941034 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 138397 AAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACG 138455 || || | ||| || || | | | ||||||||||| |||||||| || ||| | ||| || Sbjct 3649781 AAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT-AGAGTCCG 3649723 Query 138456 CGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTC 138515 || || | ||| || |||| | |||| || | || ||||| || || ||||| || Sbjct 3649722 ACCATCTTCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTC 3649663 Query 138516 TTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACC 138573 || || || | ||||||| ||| |||| || | ||||| | || ||||| | Sbjct 3649662 CTTATCAGT-AATTTTTGTCTTAACATTG-TCAATAGTGTCTGAGCTTTCGACCTCAAGG 3649605 Query 138574 GTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || || ||||| || || || ||||| ||||||||| Sbjct 3649604 GTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATG 3649563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496012742793120