Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq146 134 1e-26 seq170 114 9e-21 seq57 109 4e-19 seq58 107 1e-18 seq157 104 2e-17 seq1 86.0 4e-12 >seq146 Length=1334862 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | |||| || || ||||| || || ||||| || ||||||||||| | Sbjct 1120095 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCG 1120036 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| |||||||| || ||| | |||| || ||||| || |||| Sbjct 1120035 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGA 1119976 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| || || |||| || | || || |||||| | ||| || Sbjct 1119975 ATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACT 1119916 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| |||||||| || || || ||||| || ||||| ||||| Sbjct 1119915 TCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq170 Length=38796167 Score = 114 bits (126), Expect = 9e-21 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || |||||||| | | ||||| || ||||||||||| | Sbjct 3261138 CCACCACGAAGCCTGAACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTACG 3261197 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| |||||||| | ||| | |||| || ||||| || || | Sbjct 3261198 AGAGTTCTTCCATCTTCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTGAA 3261257 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || |||| || | || || ||||| | ||| || Sbjct 3261258 ATTCCTTCCTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTATATCGAAAGATTCGACT 3261317 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 |||| ||| |||||||| | || | ||||| || ||||| ||||| ||||| Sbjct 3261318 TCTAGGGTTATGGTTTTTCTAGTTACGGTTTTCACGAAAATCTGCAT-TTTGA 3261369 >seq57 Length=33024243 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| | ||||| || || ||||| || ||||||||||| Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 18658291 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | |||||| || ||| | |||| ||| |||||||| |||| Sbjct 18658292 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGA 18658351 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| ||||| || |||||||| ||| | || || || ||| ||| || Sbjct 18658352 ATGCCTTCTTTGTCTTGGATCTTTGCTTTC-ACATTGTCGATGGTGTCGGAGGATTCGAC 18658410 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| ||| ||||||||||| || || ||||| || || || ||||| ||| Sbjct 18658411 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 18658462 >seq58 Length=2649046 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || || ||||||||| ||| ||| | ||||||| | || Sbjct 1146901 TGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGC 1146842 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||| | || ||||| |||||| ||||||||||| ||||||| Sbjct 1146841 TTTCCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATTTTG 1146782 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || ||||||||| | |||| || || | ||| || || || || || Sbjct 1146781 GCTTTGACGTTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTA 1146722 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || |||||| Sbjct 1146721 AGAGTCTTGACGAAGATCTGCATA 1146698 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || ||||| |||||||| ||| |||| ||| ||||||| | ||| Sbjct 1146674 ATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCAAGTTG 1146615 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||| || || | || ||||| ||||| || ||||||||||||||||| || || Sbjct 1146614 TTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 1146555 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| ||||| | || || || ||| | | || || || | || ||||| || || | Sbjct 1146554 TGC-CTTTACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCGG 1146496 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| || || |||||||| Sbjct 1146495 TAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||||||||| || || || || || |||||||| | | | | | ||||| Sbjct 1147136 AACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAAAGTACGGCCATCTTC 1147077 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | ||||| | ||| ||||| ||||| ||||||||||| Sbjct 1147076 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTG 1147017 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || || ||||| |||| || || || ||||| || || Sbjct 1147016 AATCTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCAACTTCCAAAGTAATCGTCTT 1146957 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || ||||| ||||||||| Sbjct 1146956 CCCGGTGAGAGTCTTCACAAAGATTTGCATA 1146926 >seq157 Length=426068 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || |||||||| || || || || || ||||| ||| ||| | | | || || | ||| Sbjct 398259 TGGAGGGTAGACTCCTTCTGGATATTATAATCAGCT-AGAGTACGACCATCCTCGAGTTG 398201 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | |||| | ||||||||| |||||| ||||||||||| |||||| Sbjct 398200 TTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGAATTTT 398141 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || |||| || || | ||||||||| || ||||| Sbjct 398140 AGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTTCCCTGT 398081 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| |||||||| Sbjct 398080 TAGGGTTTTGACAAAGATTTGCAT 398057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||||||||||||||| || ||||| || |||||||| | | | | | || || Sbjct 398493 ACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCCAAAGTACGACCATCCTCA 398434 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || || || | || | | |||||| || ||| || ||||||||||| Sbjct 398433 AGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGT 398374 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || ||||| | || || || || |||||||| || Sbjct 398373 ATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTT 398314 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 398313 CCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATT 15031 ||||||||||| || || || ||||||||||| || ||| || |||| || | | Sbjct 398715 TGAAGGGTAGACTCCTTCTGGATGTTGTAATC--TGCCAATGTACGACCGTCCTCGAGCT 398658 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-T 15090 | || ||||| | || | | || ||||| ||| || || |||||||| || | Sbjct 398657 GCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGTATCT 398598 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 |||| || ||| | || || ||||| | || || || || |||||||| || ||| Sbjct 398597 TTGCCTTC-ACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTCTTTCCT 398539 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || || |||||||||||| Sbjct 398538 GTGAGAGTCTTGACGAAAATTTGCATA 398512 >seq1 Length=34941034 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025 ||| || || ||||| || || ||||| ||||||||||| ||| ||| | | | |||| Sbjct 3649773 AACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT-AGAGTCCGACCATCTT 3649715 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| || || || | || | | || ||||| ||| || || ||||| ||| Sbjct 3649714 CCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCAG 3649655 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| | || ||| | || ||||| || |||| || || | ||| ||||| | Sbjct 3649654 TAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACCTCAAGGGTGATGGTCT 3649595 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || || || ||||| || ||||| Sbjct 3649594 TGCCAGTAAGGGTCTTGACAAAGATCTGCAT 3649564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357216699894110