Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq58 131 2e-25 seq1 120 3e-22 seq157 89.7 5e-13 >seq58 Length=2649046 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || | ||||||||| | |||||||| || || || ||||| || || Sbjct 1147381 CCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1147322 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || |||||| ||||||| | ||||||||| || || Sbjct 1147321 AAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 1147262 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||||||| ||||| | |||| || || | |||||| || Sbjct 1147261 ATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCACC 1147202 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| || || |||||||||||||| Sbjct 1147201 TCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | |||||| || | |||||||| ||||| ||||||||||| | | || | Sbjct 1147600 AAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTC 1147541 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || ||||| | ||||| | |||||| || || || || |||||| Sbjct 1147540 CCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCC 1147481 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || ||| ||| || ||||| | |||| ||||||| ||||| || || | || Sbjct 1147480 TTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAACCTCCAAAGTG 1147421 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || ||||||| || || |||||||||||||| Sbjct 1147420 ATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 111 bits (122), Expect = 1e-19 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||||||| | | || || || || ||||| |||||| Sbjct 1146895 GTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCA 1146836 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| |||||| | ||||| || || || ||||| ||||||| | ||| ||| || || Sbjct 1146835 GCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATTTTGGCTTT 1146777 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| |||| || || | ||| |||||||| | ||| | || ||||| || |||| Sbjct 1146776 GACGTTG-TCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAG 1146718 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || || |||||||| Sbjct 1146717 TCTTGACGAAGATCTGCAT 1146699 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || || || || || ||||||||||| ||| || || ||| || Sbjct 1147135 ACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAAAGTACGGCCATCTTCG 1147076 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| ||||||| | |||||| || ||||| || || ||||||||| Sbjct 1147075 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 1147016 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| || |||| || || ||||| | || | ||| || Sbjct 1147015 ATCTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCAACTTCCAAAGTAATCGTCTTC 1146956 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| || ||||| || ||||| Sbjct 1146955 CCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 >seq1 Length=34941034 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || || || ||||| || ||||| || | | ||| | ||| || Sbjct 3649544 ACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTCCATCCTCC 3649485 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || ||||| ||||| |||||| | ||||||||| || || || |||||||||||| | Sbjct 3649484 AGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTGG 3649425 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| ||||| | ||||||||||||| || | || || Sbjct 3649424 ATCTTGGTCTTGACATTATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAGTCTTT 3649365 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| |||||||| ||||| || ||||| Sbjct 3649364 CCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || |||||||||||||| ||| || || ||| || | ||| || ||| Sbjct 3650672 GTCGACTCCTTCTGAATATTGTAATCTGCCAGAGTTCGCCCATCCTCCAACTGCTTCCCA 3650613 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || ||||||||| ||||| || || ||||||||| || || ||| Sbjct 3650612 GCAAAGATGAGTCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTGGTCTTC 3650553 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | |||||| || || | ||| | || || || || || || Sbjct 3650552 ACATTATCAATTGTATCAGAACTCTCCACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTC 3650493 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 3650492 TTCACAAAGATCTGCAT 3650476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || |||||||| || || || | | || || ||| || Sbjct 3650456 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCCTCC 3650397 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| |||| | || |||||| || | || || ||||||||||| ||| Sbjct 3650396 AGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCTGTG 3650337 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | || | || |||| || || ||||| | || | || ||| Sbjct 3650336 ATCTTTGCCTTCACATTGTCAATAGTATCCGAGCTTTCAACTTCAAGTGTGATGGTCTTG 3650277 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| || || || |||||||| Sbjct 3650276 CCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 >seq157 Length=426068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || |||||||||||||| | | || || ||| || || || || || Sbjct 398025 GTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCG 397966 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || |||||| || ||||| || ||||| ||||||||||||| | ||| | | || ||| Sbjct 397965 GCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGT-CTTGAATCTTTGCCTT 397907 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | || || | |||||| || |||| || | ||| || || |||| || Sbjct 397906 AACATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGT 397847 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 397846 CTTAACAAAGATTTGCAT 397829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || ||||| ||||| | | || ||| ||| || || ||||||||| Sbjct 398253 GTAGACTCCTTCTGGATATTATAATCAGCTAGAGTACGACCATCCTCGAGTTGTTTTCCA 398194 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | ||| || || || || || || |||||||| ||||| ||| Sbjct 398193 GCAAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGAATTTTAGCCTTA 398134 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || || | ||| | || || || || || ||| Sbjct 398133 ACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTTCCCTGTTAGGGTT 398074 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| || |||||| Sbjct 398073 TTGACAAAGATTTGCATG 398056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475261587435040