Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq146 134 1e-26 seq58 116 3e-21 seq57 113 4e-20 seq1 107 2e-18 seq170 102 7e-17 seq157 96.9 3e-15 >seq146 Length=1334862 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || ||||| | ||| | || ||||||||||| || || || || ||||| | Sbjct 1120095 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCG 1120036 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||||||||| ||| | |||| ||||| || || || ||| Sbjct 1120035 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGA 1119976 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || |||||||| ||||| | | ||||||| || | || | || |||||||| || || Sbjct 1119975 ATTCCTTCTTTGTCTTGGA-TCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCAC 1119917 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || | ||||| || ||||| ||||| || ||||| ||||| Sbjct 1119916 TTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq58 Length=2649046 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||| ||||||||||| || || ||| || ||| || || Sbjct 1146679 ACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCA 1146620 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 1146619 AGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGG 1146560 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || ||| || | || | || | |||||||||| ||| || |||||||| | || || Sbjct 1146559 ATCTTTGCCTTTA-CGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGTCTT 1146501 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| || ||||| || || ||||||||| Sbjct 1146500 GCCGGTAAGGGTTTTCACGAAGATTTGCATC 1146470 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||| ||||| |||||||| |||||| || |||| || || Sbjct 1146908 CACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTC 1146849 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || ||||| ||| | |||| | ||||||||| || ||||||||||| || ||||| Sbjct 1146848 GAGCTGCTTTCCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTG 1146789 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||||| ||||| || | || | || |||||| |||||||| || || | || | Sbjct 1146788 AATTTTGGCTTTGA-CGTTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCT 1146730 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| || || || || ||||| Sbjct 1146729 TGCCAGTAAGAGTCTTGACGAAGATCTGCAT 1146699 >seq57 Length=33024243 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || || || ||||| || ||||| | || | ||| || Sbjct 18658250 ACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCA 18658309 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| ||| | |||| ||||| ||||| || |||||||||||||| ||||| Sbjct 18658310 AGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 18658369 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | || | ||||||||| || |||||||| || || | ||||| Sbjct 18658370 ATCTTTGCTTTCACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTA 18658429 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || || |||||| Sbjct 18658430 CCCGTTAGGGTTTTCACGAAGATCTGCATC 18658459 >seq1 Length=34941034 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATT 45195 ||| || ||||||||||||||||| || || || ||| ||| || | || |||| || Sbjct 3649539 ATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTCCA-TCCTCCAGTT 3649481 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || || | |||| | ||||| || || ||||| || || || || || || | Sbjct 3649480 GTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTGGATCT 3649421 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | |||| || | ||||| || ||||||||||||||||| || || |||| Sbjct 3649420 TGGTCTTGACATTATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAGTCTTTCCGG 3649361 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 | |||||||| ||||| ||||||||| Sbjct 3649360 TGAGAGTTTTCACAAAGATTTGCATC 3649335 >seq170 Length=38796167 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || ||||| ||||| | ||| ||| | |||| || || || || ||||| | Sbjct 3261138 CCACCACGAAGCCTGAACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTACG 3261197 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||||||||||| ||| | |||| ||||| || || || | | Sbjct 3261198 AGAGTTCTTCCATCTTCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTGAA 3261257 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || ||||| | | ||||||| || | || | | ||| |||| ||||| Sbjct 3261258 ATTCCTTCCTTGTCTTGGA-TCTTTGTTTTCACGTTGTCGATTATATCGAAAGATTCGAC 3261316 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || | ||||| | |||| ||||| || ||||| ||||| Sbjct 3261317 TTCTAGGGTTATGGTTTTTCTAGTTACGGTTTTCACGAAAATCTGCAT 3261364 >seq157 Length=426068 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || ||||| ||||| || ||||| ||||| Sbjct 398058 ATGCCACCACGGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGAATATTGTAATCA 397999 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | ||| || || || | |||| ||||||||||| || Sbjct 397998 GCAAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAAGATCAGACGTTGCTGGTCAGGA 397939 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || |||||||| ||| || | || | || || ||| ||| Sbjct 397938 GGAATGCCCTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAACTCTCC 397879 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | ||| || || || | || || ||||| ||||||||| Sbjct 397878 ACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCATC 397828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTC 45190 || || || || || || ||||| |||||||||||||| ||| | || | ||| || Sbjct 398265 ACCAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCAGCT-AGAGTACGACCATCCTC 398207 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||||||||| || | |||| | || ||||| || ||||| ||||| || ||||| Sbjct 398206 GAGTTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTG 398147 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| || | || | |||||| || || || || || |||| || || Sbjct 398146 AATTTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTT 398087 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| ||||| |||||||| Sbjct 398086 CCCTGTTAGGGTTTTGACAAAGATTTGCAT 398057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||||||||| || || |||||||| || ||| | ||| ||| Sbjct 398949 ACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCGAGGGTACGACCATCTTCC 398890 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | |||| | ||||| || || || || ||||| || || || Sbjct 398889 AACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGT 398830 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | || | || || || ||| || || ||||| | ||| || Sbjct 398829 ATCTTTGTTTTCACATTATCAATAGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTT 398770 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| || || ||||| |||||| Sbjct 398769 CCAGTGAGAGTCTTCACGAAAATCTGCATC 398740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451775808490160