Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq58 87.8 1e-12 seq57 87.8 1e-12 seq1 86.0 4e-12 seq146 82.4 5e-11 >seq58 Length=2649046 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | |||||| || |||||||| | ||| ||| || || ||||| ||||| ||| Sbjct 1147153 CCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCC 1147094 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | || || || |||| || || | |||||| || | || Sbjct 1147093 AAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 1147034 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || |||| | |||| | || || | |||||| | Sbjct 1147033 ATACCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATC--GTATCCGAGCTTTCAA 1146976 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| || || || || | ||| || || ||||| ||||| Sbjct 1146975 CTTCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 >seq57 Length=33024243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || || | || | ||| ||||| || || || ||||| || Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 18658291 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| ||| | ||||| | ||| || || || | || Sbjct 18658292 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGA 18658351 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| || ||| ||| | | |||| | ||||| | | ||| | Sbjct 18658352 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTGTCGATG--GTGTCGGAGGATTCGA 18658409 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||||||||||| ||||| |||||||||||||| Sbjct 18658410 CTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458 >seq1 Length=34941034 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | |||||| || |||| ||||||||| || || || |||||||||||||| Sbjct 3650019 GCCTCCCCTCAAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGC 3649960 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | |||| || | ||||| ||| |||| || | | |||||| || | || Sbjct 3649959 CAATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGG 3649900 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | | | || || || | || | | ||||| | || || | Sbjct 3649899 GATTCCTTCCTTGTC-CTGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTCTCAA 3649841 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || | ||| || || || | ||||| || ||||||||||| Sbjct 3649840 CTTCCAAGGTTACTGTCTTGCCTGTGAGGGTTTTAACAAAGATCTGCAT 3649792 >seq146 Length=1334862 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 39485 AATCATCG--CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATT 39542 |||||||| || || || | | || ||||| || | || |||||| || || || Sbjct 1120105 AATCATCGTACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTT 1120046 Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 ||||| || | | | | |||| ||||||||||| ||| | ||||| | || || || Sbjct 1120045 GTAATCTGCGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTG 1119986 Query 39603 ATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTG 39661 ||| | || | ||||||||||| | | ||||||| ||| | | | ||| || | Sbjct 1119985 ATCTGGTGGAATTCCTTCTTTGTCTTGGA-TCTTTGTTTTCACGTTGTCGATTGTATCGG 1119927 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 1119926 AAGATTCCACTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347199215862518