Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq57 134 1e-26 seq127 131 2e-25 seq58 125 7e-24 seq1 113 5e-20 >seq57 Length=33024243 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || ||||| ||||| || ||||| |||||||| ||| | || ||||| Sbjct 18658463 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAAT 18658404 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || |||||| | | | | | |||| ||| |||| |||||||| || ||||| | | Sbjct 18658403 CCTCCGACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAG 18658344 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 ||||||| || || |||| ||| || ||||| || || || | ||||| || || | Sbjct 18658343 ACCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATT 18658284 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| || || |||| || || | || || ||| ||||||| || Sbjct 18658283 ACAACATCCAGAAAGAGTCGACTCTTCACCTTGTTCTTCGTCTGAGAGGTGG 18658232 >seq127 Length=60962716 Score = 131 bits (144), Expect = 2e-25 Identities = 363/552 (66%), Gaps = 11/552 (2%) Strand=Plus/Plus Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 || |||||||| || ||||| | || ||||| | || || | ||| || || || Sbjct 5746933 AAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTT 5746992 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 || || ||||| || || || || || |||||||| |||| | |||||| || || ||| Sbjct 5746993 AAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAG 5747052 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 || | || || | || || || | | | ||| | || | ||| | Sbjct 5747053 AATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGA---TTCAGACCCA 5747109 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 | ||||| | ||| ||||| || ||||| | ||| || || |||| |||||||| || Sbjct 5747110 TCAATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGC- 5747168 Query 133132 TTCAACAAACG-GAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGA 133187 || | | | | ||| || | | || ||| | | ||| || || | ||| || Sbjct 5747169 -TCGAAAGAGGTGAGATTTT--TGGGATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGA 5747225 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 |||||||| || || | ||| || |||||||||||||| |||||||| ||||| || Sbjct 5747226 GTACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTC 5747285 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | || ||||| |||| || || | | |||||||| ||||| || || Sbjct 5747286 AGCGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGA 5747345 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC 133367 |||||||| ||||| || ||||| | |||||||| ||||| | | | | || Sbjct 5747346 TGCGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTC 5747405 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||| | || || || || || || || | ||||||||||| || ||||| Sbjct 5747406 CCAGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 5747465 Query 133428 TTTTTTGTACAT 133439 |||||||||||| Sbjct 5747466 TTTTTTGTACAT 5747477 >seq58 Length=2649046 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || ||||| ||||| || |||| || ||| || Sbjct 1146471 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATAACTCTCGAGGTTGAGAGTTCC 1146530 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| || |||||||| | || || Sbjct 1146531 GACACCATCGACAACG-TAAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 1146589 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||| || || |||| || || ||| ||||||||| Sbjct 1146590 ACAACGTTTAATCTTTGCCGGAAAACAACTTGAAGACGGCCGAACTCTCGCCGACTACAA 1146649 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||| | || || ||||| ||||| || Sbjct 1146650 CATCCAAAAGGAGTCAACTCTCCATCTTGTCCTCCGTTTAAGAGGAGG 1146697 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || |||||||| | || || ||| | | Sbjct 1147383 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGCTCG 1147442 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||| |||| || || ||||| |||||| | ||||| Sbjct 1147443 GACACGATCGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAG 1147502 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || || || ||||| || || | | | || || || ||||| Sbjct 1147503 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACTCTTGCGGATTACAAT 1147562 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || || |||||||| |||||||| || || Sbjct 1147563 ATCCAAAAGGAGTCTACCCTTCACTTGGTGCTTCGTTTGAGGGGAGG 1147609 >seq1 Length=34941034 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || || || | | Sbjct 3650248 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACACTTGAAGTTGAAAGCTCG 3650307 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||| ||| ||||| ||||||||||| || ||||| Sbjct 3650308 GATACTATTGACAATGTGAAGGCAAAGATCACAGACAAGGAGGGAATTCCAGCTGACCAG 3650367 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | |||||| || |||||||| || | || || || ||||| ||| Sbjct 3650368 CAGAGACTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGGACTCTAGCTGACTATAAC 3650427 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || |||| ||||| || ||| | ||||| || Sbjct 3650428 ATTCAAAAGGAATCAACCTTGCACTTGGTCCTCCGTCTCAGAGGTGG 3650474 Score = 100 bits (110), Expect = 3e-16 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || || || || |||| |||||| | | Sbjct 3649336 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAGACTATTACTCTCGAAGTCGAGAGCTCA 3649395 Query 38304 GACAGCGTGCAAACGCTTA----AAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||| ||| || | | |||| || |||| ||||| ||||| ||||| | | Sbjct 3649396 GACA-----CAATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGGATTCCACCAG 3649450 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||| |||| || | || || ||||| ||||| || | | || | |||| Sbjct 3649451 ATCAGCAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGAAGGACGTTAGCAGACT 3649510 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||||||| | || || |||||||| || ||| | || || ||| Sbjct 3649511 ACAACATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTCAGGGGTGGC 3649563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499921175568640