Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq187 129 7e-25 seq1 95.1 2e-14 seq18 89.7 6e-13 seq127 86.0 8e-12 >seq187 Length=45274173 Score = 129 bits (142), Expect = 7e-25 Identities = 250/364 (69%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | | ||||| ||||| || || | || || ||||| || Sbjct 20417827 TCAAAGCGTCCAGGCCTCAACAGCGCAGAGTCAAGAATGTCTGCTCGGTTAGTTGCAGCA 20417886 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| ||||| || | ||||| ||||||||||| |||| ||||||||| | Sbjct 20417887 ACAACAATTATACCAGTATTACCCTCAAAGCCATCCATCTCAGTCAGAAGCTGGTTCAGT 20417946 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 16067 || ||||||| ||||||||| || | | |||| || | |||| | ||||| ||| Sbjct 20417947 GTCTGTTCCCTTTCATCATTGCCTCCCCCAATCCCAGTACCCCTTTGCCTCCCCACTGCA 20418006 Query 16068 TCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATC 16126 ||||| ||||| | || || || || || |||||| || ||| ||| || || Sbjct 20418007 TCAATTTCATCCACAAACACAATACAAGGAGCATTTTCCTTTGCTTTCTTGAAA-AGGTC 20418065 Query 16127 CCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 16186 || || || || ||||||||||||||||| || ||||| | || ||||| || | Sbjct 20418066 ACGCACTCGTGAAGCTCCCACACCAACAAACATTTCAACAAATTCTGACCCGGAA-ATGG 20418124 Query 16187 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 16245 || || || ||| || ||| || ||||| || || || || ||||| || || | Sbjct 20418125 AGAAAAATGGAACACCAGCTTCCCCAGCAATAGCCTTAGCCAGCAGGGTCTTTCCAGTCC 20418184 Query 16246 CTGG 16249 |||| Sbjct 20418185 CTGG 20418188 >seq1 Length=34941034 Score = 95.1 bits (104), Expect = 2e-14 Identities = 223/328 (68%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | || || ||||| || | |||| ||||| || | ||||| Sbjct 27640909 TCAAGAATGTCTGCCCGGTTAGTTGCAGCAACAACAATTATACCAGTATTACCCTCAAAG 27640850 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 ||||||||||| |||| |||||| || | || ||||||| ||||||||| || | | Sbjct 27640849 CCATCCATCTCAGTCAGAAGCTGATTCAGTGTCTGTTCCCTTTCATCATTGCCTCCCCCA 27640790 Query 16038 CCACCAG--CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 16095 |||| | | | |||| | ||||| ||||| |||||| | | || || || || | Sbjct 27640789 ATCCCAGTACCCCCCTTTGCCTCCCCACTGCATCGATCTCAACCACAAACACAATACAAG 27640730 Query 16096 GTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGC-CCACACCAAC 16153 | |||||| || ||| ||| || || || ||| | || || |||||||||| Sbjct 27640729 GAGCATTTTCCTTTGCTTTCTTGAAA-AGGTCACG--CACTCGTGAAGCTCCACACCAAC 27640673 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || ||||| | || ||||| || | || || || ||| || ||| || | Sbjct 27640672 AAACATTTCAACAAATTCTGACCCGGAA-ATGGAGAAAAATGGAACACCAGCTTCCCCAG 27640614 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || || ||||| || Sbjct 27640613 CAATAGCCTTAGCCAGCAGGGTCTTTCC 27640586 >seq18 Length=621311 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/207 (71%), Gaps = 24/207 (12%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| || ||||| ||||||| |||||||| | Sbjct 599111 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--- 599167 Query 16034 CATACCA-CCAGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 16087 |||| ||| | ||| | ||| | || || ||||||||||||||||| || || Sbjct 599168 ---ACCACCCATCCCTGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATAAACAC 599224 Query 16088 GATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GC 16141 ||||| || ||| | || || | ||||| | ||||| ||| || | || Sbjct 599225 AATGCAAGGTGCCTTGCTCTTTGCCTTC----TCAAACAAATCCC--TCACCCTAGAAGC 599278 Query 16142 GCCCACACCAACAAACATCTCCACAAA 16168 ||||| |||||||||| ||||||||| Sbjct 599279 TCCCACCCCAACAAACAGCTCCACAAA 599305 >seq127 Length=60962716 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 112589 || || | ||||||||||| | | |||||| ||| |||||||| ||||| ||||| Sbjct 7118920 GTTACCACAAACCTAAACAAAATAATTGATGTAAACTTTTACCCTGTTGAAACTGCAAAA 7118861 Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649 | ||| || |||||||| || |||||||| | || |||||||| || || ||| ||| Sbjct 7118860 AGATCAAACATGAGACATCGGCCAATTGGAATTGGAGTCCAAGGCCTTGCAGATACTTTC 7118801 Query 112650 AT 112651 || Sbjct 7118800 AT 7118799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620430120017120