Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq187 87.8 2e-12 seq127 87.8 2e-12 seq22 87.8 2e-12 >seq187 Length=45274173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| Sbjct 38606333 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGCCC 38606278 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 38606183 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 38606128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 39017726 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 39017781 >seq127 Length=60962716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330 |||||| ||| |||||||||||||| ||||| ||||||| ||| || | || | | ||| Sbjct 7119246 ACATATCGGGGAAGAGCAATAGACGCCAGATTACACACAGCAGTTTC-TGTTGGACTGGT 7119304 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||| || | ||| || |||||||| || ||| |||||| ||| | ||||| |||||| Sbjct 7119305 GTACTCAATAATCTCAGTACACAAATTTGAAGACTTAATTGTACCAAGGTTCTGCTGATT 7119364 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| |||||| |||||||| ||||||| |||| ||||| || | ||| |||| ||| Sbjct 7120189 TGGTCAACATATCGTGCTGTATCATTGAACACCCGCAGCATTGGGACAATGCCATTCGAT 7120248 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTT--ATTGGCACGAATGTCGTGGATATGCATAC 110887 ||||||||||| | || |||| | ||||||| || | ||| | | | || Sbjct 7120249 GTCCCATTTGTACCACGTAT--ATAACTTCCAGTGGCACGGATATTGTGAACAGAGACAC 7120306 Query 110888 CAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCAT 110947 ||||||| || || | ||||| || |||||||| | || ||| |||| || || | Sbjct 7120307 CAATACCTCCAGCAGATTTACTGATAACAGCACACTCCTTCAGAGTATCATATATTCCTT 7120366 Query 110948 CAAT 110951 |||| Sbjct 7120367 CAAT 7120370 >seq22 Length=40393389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| Sbjct 61705 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGCCC 61650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588679700898800