Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq187 134 2e-26 seq127 123 3e-23 seq1 96.9 4e-15 seq18 89.7 6e-13 >seq187 Length=45274173 Score = 134 bits (148), Expect = 2e-26 Identities = 296/441 (67%), Gaps = 2/441 (0%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | | ||||| ||||| || || | || || || || || Sbjct 20417827 TCAAAGCGTCCAGGCCTCAACAGCGCAGAGTCAAGAATGTCTGCTCGGTTAGTTGCAGCA 20417886 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| ||||| || | | ||||| ||||||||||| |||| ||| ||||| | Sbjct 20417887 ACAACAATTATACCAGTATTACCCTCAAAGCCATCCATCTCAGTCAGAAGCTGGTTCAGT 20417946 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 9374 || ||||||| ||||||||| || | | |||| || | |||| | ||||| ||| Sbjct 20417947 GTCTGTTCCCTTTCATCATTGCCTCCCCCAATCCCAGTACCCCTTTGCCTCCCCACTGCA 20418006 Query 9375 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 9434 ||||| ||||| | || |||||||| || |||||| || | | || || || Sbjct 20418007 TCAATTTCATCCACAAACACAATACAAGGAGCATTTTCCTTTGCTTTCTTGAAAAGGTCA 20418066 Query 9435 CGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG- 9493 || || | | || ||||||||||||||||| || ||||| | || ||||| || | Sbjct 20418067 CGCACTCGTGAAGCTCCCACACCAACAAACATTTCAACAAATTCTGACCCGGAA-ATGGA 20418125 Query 9494 GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACC 9553 || || || ||| || ||| || ||||| || || || || ||||| || || || Sbjct 20418126 GAAAAATGGAACACCAGCTTCCCCAGCAATAGCCTTAGCCAGCAGGGTCTTTCCAGTCCC 20418185 Query 9554 TGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTC 9613 ||| || | || || ||||| ||||| || ||| || | | ||||| Sbjct 20418186 TGGTGGGCCAACAAGCAGAACACCCTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTC 20418245 Query 9614 AGGTTGCTTGAGAAAATCCAC 9634 ||| | || ||||| ||||| Sbjct 20418246 AGGCTTTTTTAGAAATTCCAC 20418266 >seq127 Length=60962716 Score = 123 bits (136), Expect = 3e-23 Identities = 365/556 (66%), Gaps = 10/556 (2%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || || || ||||| || || | |||||| || || || || ||||| || || Sbjct 5746951 TGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATTAGCCCA 5747010 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 |||||||| | |||| |||| | |||||| || |||||||| || || || | ||| Sbjct 5747011 CGCTTCTTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAGAATATCCCTTCAATACAA 5747070 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCC 117465 |||||||||| | | ||| || || || |||| |||| ||| ||| |||| Sbjct 5747071 GCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCA---TCAATCCACCTCAGTGCC 5747127 Query 117466 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 117525 || | |||||||| | | ||| || || |||| ||| ||| ||| | || ||| Sbjct 5747128 CAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAGATTTT 5747187 Query 117526 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATT 117585 | ||| |||||||||||| | || | | ||| || |||| ||||| || Sbjct 5747188 TGGGATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATTTCAGAATGAATGTTT 5747247 Query 117586 TCATTATGGC--ATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCG 117643 ||| ||||| |||| | |||| |||| ||||||||| | ||||| || | | Sbjct 5747248 TCA--ATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACCTCTTTCA 5747305 Query 117644 CAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGA 117703 ||| || ||| || | || |||||||| || | || ||||| || || | Sbjct 5747306 TAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAGGCGAGAA 5747365 Query 117704 TGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGG 117763 || | ||||| | || || | | | ||||| | ||||| | | ||| | Sbjct 5747366 CGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAATCGGATG 5747425 Query 117764 ACAAATCAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCCTTTTTATAGAGTTCCCAG 117822 | | ||| |||||||| || |||| || | | || | || ||||| || | ||||||| Sbjct 5747426 ATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCG-GCTTTTTTGTACATTTCCCAG 5747484 Query 117823 AGTTGTGGATACTTCA 117838 | |||||| || |||| Sbjct 5747485 ATTTGTGGGTA-TTCA 5747499 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || || |||||||| |||||||||||||||||||| | || || ||||| |||| || Sbjct 7120536 TGGGGCCTTGGTGTGCCAGCATTGAAGAGGGTTGGAGAAGCATGTGTGAAC-CACCTCTG 7120594 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||| || ||| || | | | || || || || ||| ||||| |||| || Sbjct 7120595 AGACATGAAGTGGTAGGTTTTGATAGCCGACTCGATATCATCCTTATGGATCCCGACAGC 7120654 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| | ||||| ||| ||| | |||| | | || || || | | |||| Sbjct 7120655 AACCCTCATCAGCATGTGTTGTGGTCTCTCCACAACTTTTCC-TCTCACCTTCAAGAGAT 7120713 Query 107346 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | || ||||||||||||||| |||||||||| || | ||| |||| Sbjct 7120714 ATGATC-TCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 7120759 >seq1 Length=34941034 Score = 96.9 bits (106), Expect = 4e-15 Identities = 220/326 (67%), Gaps = 5/326 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | || || || || || | |||| ||||| || | | ||||| Sbjct 27640909 TCAAGAATGTCTGCCCGGTTAGTTGCAGCAACAACAATTATACCAGTATTACCCTCAAAG 27640850 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| |||| ||| || || | || ||||||| ||||||||| || | | Sbjct 27640849 CCATCCATCTCAGTCAGAAGCTGATTCAGTGTCTGTTCCCTTTCATCATTGCCTCCCCCA 27640790 Query 9345 CCACCAG--CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 |||| | | | |||| | ||||| ||||| |||||| | | || |||||||| | Sbjct 27640789 ATCCCAGTACCCCCCTTTGCCTCCCCACTGCATCGATCTCAACCACAAACACAATACAAG 27640730 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 | |||||| || | | || || || || || | | || |||||||||||| Sbjct 27640729 GAGCATTTTCCTTTGCTTTCTTGAAAAGGTCACGCACTCGTGAAGC-TCCACACCAACAA 27640671 Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9521 |||| || ||||| | || ||||| || | || || || ||| || ||| || ||| Sbjct 27640670 ACATTTCAACAAATTCTGACCCGGAA-ATGGAGAAAAATGGAACACCAGCTTCCCCAGCA 27640612 Query 9522 ATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || || || || ||||| || Sbjct 27640611 ATAGCCTTAGCCAGCAGGGTCTTTCC 27640586 >seq18 Length=621311 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/202 (71%), Gaps = 14/202 (7%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || || ||||| ||||||| |||||||| | Sbjct 599111 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--- 599167 Query 9341 CATACCA-CCAGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394 |||| ||| | ||| | ||| | || || ||||||||||||||||| || || Sbjct 599168 ---ACCACCCATCCCTGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATAAACAC 599224 Query 9395 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 ||| || || || || | | || | ||||| | ||| | ||||| || |||| Sbjct 599225 AATGCAAGG-TGCCTTGCTCTTTGCCTTCTCAAACAAATCCCTCACCCTAGAAGCTCCCA 599283 Query 9454 CACCAACAAACATCTCCACAAA 9475 | |||||||||| ||||||||| Sbjct 599284 CCCCAACAAACAGCTCCACAAA 599305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589683995409040