Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq22174 172 1e-38 >seq22174 Length=611 Score = 172 bits (190), Expect = 1e-38 Identities = 341/493 (69%), Gaps = 24/493 (5%) Strand=Plus/Minus Query 9543 CGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCATGAAGGCC 9602 ||||| ||||||||||||||||||||||| ||| | | |||||||||||||||||||| Sbjct 607 CGTGATCCGGAGATGCATCAGACGAAGAAAGGCGAGCAGTGGTATTTCGGCATGAAGGCG 548 Query 9603 CATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGCGGCCAAC 9662 || |||| ||||| | || ||||| |||||||| | ||| || |||||||||||| Sbjct 547 CACATCGGTGTCGATGTGGATTCGGGCCTGGTGCACACGGTGACGACGACGGCGGCCAAC 488 Query 9663 GAGCCGGACGTATCGCAGGCCCACGCCCTGCTGCACGGTCATGAGCAGGAAGCGT--TTG 9720 | | | |||||| | || | ||||||||||||| | | |||||| || | Sbjct 487 GTGGCAGACGTAGATGAAGCGGAATACCTGCTGCACGGTAAAG---AGGAAGTGTCCTAC 431 Query 9721 GC-GATGCGGGCTACACCGGCGTGGACAAGCGCGAGGAGATGAAGGGCAAGACGGTGAAG 9779 || || || ||||| ||||| | ||||||| ||| | | |||| || || Sbjct 430 GCGGACGCAGGCTATACCGGTGCGGACAAGAGCGCTG------CGCGCAAAGGTCTGGAG 377 Query 9780 TGGCACGTGGCGCTCAAGCGCGGAAAGATCAGGGCGATGCAGGAAGGTCCGCTGAAGGAC 9839 ||| | | |||| ||||||||| | | | ||| |||| |||||| || || | Sbjct 376 TGGAAGATTGCGCGCAAGCGCGGCAGCGTGAAGGCCATGCCGGAAGG---GCGTGAGAAG 320 Query 9840 CTCGTGATC--GCGGTCGAGCGAACC--AAGGCGCAG-ATCCGCGCCCGGGTCGAGCATC 9894 | ||||| || | || | ||| | ||||| ||| ||||| || | ||||||| Sbjct 319 CGATTGATCGAGCAGGCG-GAGAAGCAGAAGGC-CAGCATCCGGGCGATTGGGGAGCATC 262 Query 9895 CGTTTCATGTCGTGAAGAACCTGTTTCGTCATCG-CAAGGTGCGCTACAAGGGTCTAGCC 9953 | || | || |||||| || | |||| | || | || |||| |||||| | || Sbjct 261 CATTCCGAGTGGTGAAGCGCCAG-TTCGGCTACGTGATGGCTCGCTTCAAGGGATTGGCG 203 Query 9954 AGGAACACGGCACAGCTGTTCAGTCTGTTCGCGCTGGCGAACCTGGTGATCGCGAAAAAT 10013 | |||||| || ||| | ||| ||||||||||| |||| ||| ||| |||| ||| Sbjct 202 AAGAACACAGCGCAGGTCATCACACTGTTCGCGCTATCGAATCTGTGGATGGCGAGAAAG 143 Query 10014 CAGCTGTTGTCGA 10026 | ||||| ||| Sbjct 142 CGATTGTTGGCGA 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118976711313096