Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq26327 277 3e-69 seq190 269 4e-67 seq20795 199 6e-46 seq96 145 1e-29 seq1964 129 9e-25 seq295 125 1e-23 seq252 123 4e-23 seq223 114 2e-20 seq58 87.8 3e-12 seq127 86.0 9e-12 >seq26327 Length=568 Score = 277 bits (306), Expect = 3e-69 Identities = 368/510 (72%), Gaps = 1/510 (0%) Strand=Plus/Minus Query 215394 TAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTT 215453 |||| ||||| ||||| ||||| || ||||| || || || | || || ||| | || | Sbjct 516 TAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGCGAACCTGTTTCCGGAT 457 Query 215454 CTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCG 215513 || || | || || ||||| || || |||||||| || | |||| ||| || || | Sbjct 456 CTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATTG 397 Query 215514 GATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTG 215573 | || ||||| || || || |||||||| ||| | ||||| || ||| | |||||||||| Sbjct 396 GGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTG 337 Query 215574 GACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGAC 215633 | |||| | || || | | |||||| | ||||| | || || || | Sbjct 336 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 277 Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | |||||| | |||||||| |||||| || || || | Sbjct 276 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 217 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 | || | || || ||| || ||| | | || ||| | ||||| || || |||| Sbjct 216 CGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTG 157 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| || ||||||||||| || ||||||| ||| |||| ||||||||||||| Sbjct 156 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 97 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 ||||||| || ||||| ||||| |||||||||||||| |||||||| ||||| || || Sbjct 96 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCC 37 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTA 215903 | || ||| ||||| ||||| |||| || Sbjct 36 TATTTAGTGCTATGCATGGTTC-CTTGGTA 8 >seq190 Length=503529 Score = 269 bits (298), Expect = 4e-67 Identities = 382/535 (71%), Gaps = 3/535 (1%) Strand=Plus/Minus Query 215746 TTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCA 215805 ||| ||||||| |||||| || | ||| ||| | ||||||| ||| |||| ||||| Sbjct 35702 TTTTTCTGATGGTATGCCTCTAGT--TCTTTGGTATTTTCAACTTTATGATTGTATTCCA 35645 Query 215806 GGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGG 215865 ||||||||| ||||| || |||||||||| |||||||||||||| |||||||| ||||| Sbjct 35644 GGCTGAGCATAACATCCTTGTGCACCCATTTCACATGTTAGGTGTAGCTGGTGTTTTCGG 35585 Query 215866 TGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGAC 215925 || || | || ||| ||||| ||||| | || || ||| | | |||||||| || Sbjct 35584 CGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGAGAAAC 35525 Query 215926 AACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAA 215985 || | | |||||| || | ||||||| ||||| |||||||| |||| || | Sbjct 35524 CACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA-ATTATA 35466 Query 215986 CATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAA 216045 |||||||| || || ||||| ||| |||| ||||||||||||| || ||||||||| Sbjct 35465 TATCGTAGCCGCTCATGGTTATTTTCGTCGATTCATCTTCCAATATGCTAGTTTCAACAA 35406 Query 216046 CTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGC 216105 || | | | ||||| ||| | || || | ||| | | |||| | ||||| Sbjct 35405 TTCTCGTTCTTTACACTTATTCTTAGCGGCTTGGCCTATAGTAGGTATTCAGTTTACTGC 35346 Query 216106 AATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGT 216165 | ||| | |||||||| ||||||| || |||||||| |||||||| ||||| || Sbjct 35345 TTTAGGTATTAGTACTATGGCTATCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGT 35286 Query 216166 AGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGG 216225 | |||| || ||| ||| | ||| | | ||||| | || ||||| Sbjct 35285 TAATAGTCTTGGTCGTGTCATTAATACCTAGGCTTATATCATTAACCGTGCTAACCTTGG 35226 Query 216226 TATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 ||||||||| ||||| || |||| ||||| |||||||| ||||| | |||||| Sbjct 35225 TATGGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 35171 >seq20795 Length=630 Score = 199 bits (220), Expect = 6e-46 Identities = 260/359 (72%), Gaps = 3/359 (1%) Strand=Plus/Plus Query 215801 TTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTC 215860 |||||||||||||||||||| || |||||||| || |||||||||||||| | |||||| Sbjct 185 TTCCAGGCTGAGCACAACATCCTTATGCACCCGTTTCACATGTTAGGTGTAGTTGGTGTA 244 Query 215861 TTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGA 215920 ||||| | || |||| ||| || || |||| | || || ||| | | ||||| Sbjct 245 TTCGGCGACTCCCTGTTTGGTGCTATACATAGTTCCTTGGTAACTTCTAGTTTGATCAGG 304 Query 215921 GAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACA 215980 | || || | | |||||| || | ||||||| ||||| |||||||| ||||| Sbjct 305 AAAACCACATAAAATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAGGAAGAAACT 364 Query 215981 TACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTC 216040 || || |||||||| || || ||||| |||||||| | ||||||||||| || |||| Sbjct 365 TATAATATCGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTC 424 Query 216041 AACAACTCAAGAAGTCTTCAC---TTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGG 216097 ||||| || | | | ||| |||||| | | || | | ||| | ||||| ||| Sbjct 425 AACAATTCTCGTTCTTTACACTTATTCTTCTTAGTTGCTTGGCTTGTAGTATGTATTTGG 484 Query 216098 GCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 ||||| | ||| | |||||||| |||||||| || |||||||| |||||||| Sbjct 485 TTTACTGCTTTAGGTATTAATACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 543 >seq96 Length=52461754 Score = 145 bits (160), Expect = 1e-29 Identities = 262/382 (69%), Gaps = 6/382 (2%) Strand=Plus/Plus Query 215394 TAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTT 215453 |||| ||||| ||||| ||||| || ||||| | || || | | || ||| | || | Sbjct 25270662 TAGCCTTCATTGCTGCTCCTCCAGTAGATATTAATGGTATTCGCAAACCTGTTTCCGGAT 25270721 Query 215454 CTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCG 215513 || || | || || ||||| || || |||||||| || | |||| ||| || |||| Sbjct 25270722 CTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATCG 25270781 Query 215514 GATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTG 215573 | || ||||| || || || |||||||| ||| | ||||| || ||| | |||||||||| Sbjct 25270782 GGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTG 25270841 Query 215574 GACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGAC 215633 | |||| | || || | | |||||| | ||||| | || | || || | Sbjct 25270842 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTCTTATATGGGTCGTG 25270901 Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | |||||| | |||||||| |||||| || || || | Sbjct 25270902 AGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTGCTGTTGCATATTCAGCTC 25270961 Query 215694 C---TGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCT 215750 | |||| | ||| | ||| || ||| | | || ||| | | ||| || || | Sbjct 25270962 CGGTTGTAGCGGCTAC---TGCTGTTTTCTTGATCTACCCAATTGCTCAAGGAAGCTTTT 25271018 Query 215751 CTGATGCTATGCCACTTGGAAT 215772 |||||| |||||| || ||||| Sbjct 25271019 CTGATGGTATGCCTCTAGGAAT 25271040 Score = 141 bits (156), Expect = 1e-28 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 215729 CCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAAC 215788 ||| | ||||| || || | ||||| |||||| | ||||||||||| || |||||| Sbjct 4492375 CCAATTGGTCAAGGAAGCTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 4492434 Query 215789 TACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGT 215848 | ||| |||| || ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 4492435 TTTATGATTGTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGT 4492494 Query 215849 GTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTA 215903 || | |||||| ||||| || || | || ||| ||||| ||||| |||| || Sbjct 4492495 GTAGTTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTA 4492548 >seq1964 Length=2038 Score = 129 bits (142), Expect = 9e-25 Identities = 188/264 (71%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 215823 TGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTG 215882 ||||| ||||||| |||||||||||||| | |||||| ||||| || | | || || Sbjct 540 TGATGAACCCATTTCACATGTTAGGTGTAGATGGTGTATTCGGCGGCTTCCTATTTAGTG 599 Query 215883 CAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTC 215942 ||| | ||||| | || || ||| | | ||||| || || || || | |||||| Sbjct 600 TTATGTATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAGATGAATCTG 659 Query 215943 AGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACG 216002 || | ||||||| ||||| |||||||| ||||| || | || ||||| | || | Sbjct 660 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATGATATTGTAGCCGTTCATG 719 Query 216003 GTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT--CA 216060 |||| |||||||| | ||||||||||| || ||| ||||| || | |||| || Sbjct 720 GTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTAAACAATTC--TCATTCTTTACA 777 Query 216061 CTTCTTCCTTGCAGCATTCCCTGT 216084 ||||||| | || || | ||||| Sbjct 778 CTTCTTCTTAGCTGCTTGGCCTGT 801 >seq295 Length=224868 Score = 125 bits (138), Expect = 1e-23 Identities = 238/349 (68%), Gaps = 1/349 (0%) Strand=Plus/Plus Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGT-TGACGAATGGCTCTACAATGGTGG 215574 |||||||| || | || |||||||||||| | | ||| || ||| | ||||||| ||| Sbjct 182507 TTACACTTTTATTCAATATGGGAAGCAGCATCGATATGATGAGTGGTTATACAATGCTGG 182566 Query 215575 ACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACA 215634 |||| | || || | | |||||| | ||||| | || || || | | Sbjct 182567 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAACTTGTTATATGGGCCGTGA 182626 Query 215635 GTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACC 215694 |||| || || | | | || ||| | |||||||| |||||| || || | || Sbjct 182627 GTGGAAATTTAGTGTCTGTCTAAGTAATCGCCCTTGGATTGCTGTTGCATATTCACCTCC 182686 Query 215695 TGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGA 215754 || | || || ||| || ||| | | || ||| | ||||| || ||| ||| | Sbjct 182687 GGTTGCAGCGGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTAA 182746 Query 215755 TGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814 || ||||| | |||||||| | || ||||||| ||| |||| ||||| ||| || | Sbjct 182747 TGATATGCTTATAAGAATCTCTTGTACTTTCAACTTTATGATTGTATTCCAAGCTAAGTA 182806 Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTC 215863 |||||| || || |||||||| |||||||||||||| || |||| ||| Sbjct 182807 CAACATCCTTATCCACCCATTTCACATGTTAGGTGTAACTAGTGTATTC 182855 >seq252 Length=353890 Score = 123 bits (136), Expect = 4e-23 Identities = 99/118 (84%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 215751 CTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTG 215810 |||||| |||||| || ||||||| ||| || ||||||| ||| |||| ||| |||||| Sbjct 38983 CTGATGGTATGCCTCTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCTAGGCTG 38924 Query 215811 AGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGG 215868 |||||||||| || ||||||| ||| ||||||||||||| |||||||| ||| |||| Sbjct 38923 AGCACAACATCCTTATGCACCAATTTCACATGTTAGGTGCAGCTGGTGT-TTCAGTGG 38867 >seq223 Length=728060 Score = 114 bits (126), Expect = 2e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||||||| |||| | | ||||||||||||| || |||| ||| |||| |||||| Sbjct 691410 TTTTCTGATGGTATGTCTCAAGGAATCTCTGGAATTTTTAACTTTATGATTGTATTCCAG 691351 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTT 215862 |||||||||||||| || ||||||||| | ||||||||||| | |||||||| || Sbjct 691350 GCTGAGCACAACATCCTTATGCACCCACTTCACATGTTAGGAATAGCTGGTGTATT 691295 >seq58 Length=2649046 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 |||||||| ||||| ||||||| ||||| || || |||||||| || || | ||| ||| Sbjct 2463108 GGTTACAAATTCGGTTAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGATTATTTT 2463049 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 ||||| | ||||||||||| || ||||||||| || Sbjct 2463048 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAATTC 2463011 >seq127 Length=60962716 Score = 86.0 bits (94), Expect = 9e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||| ||| |||||| | | ||| ||||| || ||||||| || |||| |||||| Sbjct 17471218 TTTTCTAATGATATGCCTTTAGAAATTTCTGGTACTTTCAACTTTATAATTGTATTCCAG 17471159 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAG 215846 ||||||||||| || | ||||||||||| ||||||||| Sbjct 17471158 GCTGAGCACAATATCTTTATGCACCCATTTTACATGTTAG 17471119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744706768074080