Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq146 98.7 6e-16 seq157 95.1 8e-15 seq57 95.1 8e-15 seq58 91.5 1e-13 seq1 91.5 1e-13 >seq146 Length=1334862 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||||||||||||||| || || | || ||| | |||| ||| Sbjct 1120077 ACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCCATCTTCC 1120018 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||||||||| || || || ||||| || ||| | || | || || ||||| Sbjct 1120017 AATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 1119958 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATT-CACCG---GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| | | | |||||| | || | || || || | ||||||||| Sbjct 1119957 ATCTT-TGTTT---TCACGTTGTCGATTGTATCGGAAGATTCCACTTCTAGGGTTATGGT 1119902 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || || || ||||| || |||||||| Sbjct 1119901 TTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq157 Length=426068 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||||||||| || | ||| | || |||| |||| ||| || |||||||| Sbjct 398932 TTCCTTCTGAATGTTATAATCAGCGAGGGTACGACCATCTTCCAACTGCTTACCGGCAAA 398873 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| | || | ||| |||||||| ||||| ||||| | | Sbjct 398872 AATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGTATCTT-TGTTT-TCACA 398815 Query 34910 TGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| || | ||| || ||| || || | || || || ||||| |||||||||| Sbjct 398814 T--TATCAATAGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTTCCAGTGAGAGTCT 398757 Query 34966 TCACAAAGATCTGCAT 34981 |||| || |||||||| Sbjct 398756 TCACGAAAATCTGCAT 398741 >seq57 Length=33024243 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| | || |||| || || ||||||||||| || Sbjct 18658268 TCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAA 18658327 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| |||||| | || | || || ||||| ||||| ||| || || Sbjct 18658328 ATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTCAC--AT 18658385 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || || || || | |||||||||||| ||||| || || || Sbjct 18658386 --TGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTT 18658443 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 18658444 CACGAAGATCTGCATCTT 18658461 >seq58 Length=2649046 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CG 34812 ||||||||||| | | |||||| |||| ||| ||| ||||| || || || || | Sbjct 1147153 CCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCC 1147094 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || ||||| || || ||||| || | | ||||||||| | | Sbjct 1147093 AAAG--TACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAG 1147036 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928 | | || |||||||| |||||| || || || | ||||| | ||| || Sbjct 1147035 GAATACCTTCCTTGTCCTGAATCTTAGCCTTAAC--AT--TGTCGATCGTATCCGAGCTT 1146980 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | || || || || || |||||||||||||||||||| |||||| Sbjct 1146979 TCAACTTCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCATA 1146926 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | | |||||||||| || || || || || || || |||| Sbjct 1147611 TTCCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCG 1147552 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | |||| || ||||| || || ||||| || | | ||||||||| | | Sbjct 1147551 CAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 1147492 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928 | | |||||||| || ||||| ||||| || | ||||| | ||| || | Sbjct 1147491 GAATACCCTCCTTATCCTGGATCTTTGCCTTGAC--AT--TGTCGATCGTGTCCGAGCTC 1147436 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | || ||||| || || || | ||||||||||| ||||||||| Sbjct 1147435 TCAACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCATA 1147382 >seq1 Length=34941034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || ||| || || ||||| ||||| | | | | | |||| || Sbjct 3649545 AACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTCCATCCTC 3649486 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| ||||| || ||||| || || | ||||| ||| | || | |||||||||||| Sbjct 3649485 CAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTG 3649426 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || ||||||| || | ||| || |||| || || | Sbjct 3649425 GATCTTGGTCTTGAC--AT--TATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAG 3649370 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| |||||||| ||||||||||| ||||| Sbjct 3649369 TCTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||| ||| | ||| || ||||| || ||||| || | Sbjct 3650018 CCTCCCCTCAAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGCC 3649959 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | |||| || |||||||| |||||||| || || | ||||||||| | || Sbjct 3649958 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 3649899 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| |||||| | || | ||| |||||| Sbjct 3649898 ATTCCTTCCTTGTCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTCTCAACT 3649839 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||||| || || || ||||| || || ||||||||||||||| Sbjct 3649838 TCCAAGGTTACTGTCTTGCCTGTGAGGGTTTTAACAAAGATCTGCATA 3649791 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| || | | ||||||||| | ||| || || || ||||| || || | Sbjct 3649790 CCACCCCTTAAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT 3649731 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| || ||||||||||| || || | |||||||||| | || Sbjct 3649730 AGAGTCCGACCATCTTCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3649671 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG-CTATCGATTCACCGGCCTCAAC 34933 | |||||||| || |||| || ||| | | || | || | || | || || Sbjct 3649670 ATACCCTCCTTATCAGTAATTTT-TGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGAC 3649612 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 3649611 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 3649564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324474367827888