Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_015721.1 Length=23931 Score E Sequences producing significant alignments: (Bits) Value seq16847 149 1e-31 seq14952 104 4e-18 >seq16847 Length=682 Score = 149 bits (164), Expect = 1e-31 Identities = 351/526 (67%), Gaps = 13/526 (2%) Strand=Plus/Plus Query 12263 GTCGAAATCAAATTGGAACAAGCCAACTTTGTGGCCTCTGGTTATATCGAAATTGCGGAG 12322 ||||| | ||| | || || | ||| || || || ||||| || ||| | ||||| || Sbjct 164 GTCGAGGTGAAACTTGAGCAGGACAATTTCGTCGCTTCTGGATACATCAATATTGCCGAA 223 Query 12323 CCGGGTGCCCTATGGCGCATCGAGGGTCAGCTTAAACAGACTACGACTTAATA-GGGGAG 12381 || || || |||||||||||| || | || | ||| | |||| ||| |||||| Sbjct 224 CCAGGCGCTCTATGGCGCATCTTTGGCGA----AATCCGACAA--ACTTTATAAGGGGAG 277 Query 12382 -GACCCAGACAATGATTTTTAAAATCTACAATTGCGACTTCGGCATGAAAATCAACGGCG 12440 || ||| ||||||| ||| ||| |||||||| ||||| || || || || ||| Sbjct 278 TGAACCA-----TGATTTTCAAACACTATAATTGCGATTTCGGGATCAAGGTCGACAGCG 332 Query 12441 TGAACTACGACTATGAACACGTAGTTGAGCTTCAAATTGAAGACAATGAACGCAACCGCC 12500 | | ||| || | ||| || || | ||||||||||| |||||| ||| | || || | Sbjct 333 TTAGCTATGATTTTGAGCATGTGGCAGAGCTTCAAATCGAAGACCCAGAAAGAAATCGAC 392 Query 12501 TCACCCGCGGGGCAAATGCCGGAAACAAAATCGGCCTGTCATACAAGGAAGGGATGCGCG 12560 ||||||| || | || ||| ||| ||| |||| || | || || || || | | Sbjct 393 TCACCCGAGGCTCGAACGCCAAAAATAAAGTCGGTCTTGCCTATAAAGACGGCCTCAAAG 452 Query 12561 ACCCAAAACGCTGGATGCTTCCAATTCTTAACATGACAGGGGCCCTTAAGGCCGTCCTGG 12620 | || |||||||||| |||| || | ||||||| | || | || | || || | Sbjct 453 AACCGAAACGCTGGACCATTCCGATCTTGAACATGAGCGCGGAATTGAAAGGTGTTCTTG 512 Query 12621 ATTCGGCTTTTGACAACCAGACTCGCATCGAGGTCTATGCCATTGACCGCGCCTCTGGCT 12680 || || || || ||||| ||| | || || || ||| ||||| | ||||| Sbjct 513 ATGGGGTGTTCGAAGCACAGACCCGCGTTGATGTTTACTGCATCGACCGAACAGATGGCT 572 Query 12681 CGTCCAAAATGGCCCGCTCTGCGATTGTGTCGAACAAGCCTCAGCAATTGACGTTGGATG 12740 || ||| ||||| ||| | | |||||| |||||||| ||| | |||| Sbjct 573 CGAGCAAGATGGCAAAAAATGCTGTCCTTTCGAACCGTCCTCAGCAGTTGCAACTTGATG 632 Query 12741 ACTCCGCGGACTCCATGCAGGTGTCCCTTGAGTTCGAGACATTCGA 12786 | || || || |||| | || || || |||||||| || ||||| Sbjct 633 AATCTGCTGAGAGCATGAATGTCTCTCTCGAGTTCGAAACTTTCGA 678 >seq14952 Length=711 Score = 104 bits (114), Expect = 4e-18 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 7285 ACCCAAAGCAGTTAATTCAGAGGGTTCAAAATTCACTGGTCTTTCAGATTTCAG--AAAA 7342 ||||||||| || || | | |||||||| | | |||||||||| |||| || Sbjct 51 ACCCAAAGCTTTTGATCAACCGTGTTCAAAACGAAGTCGTCTTTCAGA--TCAGTCAATC 108 Query 7343 GATCAAAGAGAAATACCGCGGGGAAAAATTTGAATGGCTCCCCTCGGATGCCGAGGAACC 7402 ||||||||| || ||| ||||| ||| |||||||||||||| ||||| || || || Sbjct 109 GATCAAAGAAAACTACGAGGGGGAGCAATACGAATGGCTCCCCTCCGATGCAGATGAGCC 168 Query 7403 AGACCCAGAACATCAACTCAACTATGGCAA 7432 |||||||| |||||||| ||||| ||||| Sbjct 169 GGACCCAGAGCATCAACTTAACTACGGCAA 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 76425219396812