Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq127 205 1e-47 >seq127 Length=60962716 Score = 205 bits (226), Expect = 1e-47 Identities = 563/852 (66%), Gaps = 17/852 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || ||||||| || |||||||||||||| || || | | || || | Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| ||||| || || || || | || | | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCAAC 5746764 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||| | |||||| |||||| ||||| ||||| |||| || Sbjct 5746765 AATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAA 5746824 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 |||||| | |||||| | |||||| || || | ||||| ||| | || Sbjct 5746825 GCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATC 5746884 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAAA 18968 ||| | || ||||| || | | || | | | ||| ||||| ||||| Sbjct 5746885 CCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAA-TCCATACAATAAACAAGCAAA 5746943 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||||||| ||||| ||||||| | ||||||||||| ||||| |||||||| ||||| Sbjct 5746944 ATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCAT 5747003 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTT 19087 || || | || || | ||| || || | |||| || ||| || |||||||| |||| Sbjct 5747004 TAGCCCACGCTTCTTAAGCCAAAAAAT-GGAGCAGAAACTTCCTGAGAAGAATATCCCTT 5747062 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | | ||||| |||| || || ||| || | | ||| || |||||| Sbjct 5747063 CAATACAAGCAAACGCAATTATCCTCTCTGCAAA---TGATTCAGACCCATCAATCCACC 5747119 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 ||||||||||||||||||||||||| ||||| |||| || || || | ||| || | Sbjct 5747120 TCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGT 5747179 Query 19208 -ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | || | || ||| |||| || | |||| | | ||||||||| ||| Sbjct 5747180 GAGAT-TTTTGGGATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATTTCAGAA 5747238 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 ||||| ||||| || || || ||||| |||||||| | ||||| | | || || Sbjct 5747239 TGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACC 5747298 Query 19327 TCACTACAAAATCTTTCGACC----AAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 || | || || | ||||| | |||||| || |||||||| || || || Sbjct 5747299 TC-TTTCATAAAC---CGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAA 5747354 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATT 19442 || || | || ||| |||| |||||||| || || || |||| || | ||| | | Sbjct 5747355 GAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACC 5747414 Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 | ||| |||| ||| ||||||||| | |||||||| || || || |||||||| || Sbjct 5747415 TAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTA 5747474 Query 19503 CATGTTCCATAT 19514 ||| | ||| || Sbjct 5747475 CATTTCCCAGAT 5747486 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||||| || |||| || | || | | |||||||||||| ||| Sbjct 7120183 CCTCCTTGGTCAACATATCGTGCTGTATCATTGAACACCCGCAGCATTGGGACAATGCCA 7120242 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || |||||||||||| | || | ||||| || || Sbjct 7120243 TTCGATGTCCCATTTGTACCACGTATATAACTTCCAGTGGCACGGATATTGTGAACAGAG 7120302 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || |||| || | ||||||| || || |||||||| ||| Sbjct 7120303 ACACCAATACCTCCAGCAGATTTACTGATAACAGCACACTCCTTCAGAGTATCATATATT 7120362 Query 48540 CCTTCTATACTATCATCTATCATA 48563 ||||| || ||||||||| ||||| Sbjct 7120363 CCTTCAATGCTATCATCTTTCATA 7120386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561826017115440