Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq26327 262 1e-65 seq190 217 4e-52 seq96 159 1e-34 seq20795 123 7e-24 seq295 105 2e-18 seq170 91.5 4e-14 seq223 87.8 5e-13 seq50 87.8 5e-13 >seq26327 Length=568 Score = 262 bits (290), Expect = 1e-65 Identities = 373/522 (71%), Gaps = 2/522 (0%) Strand=Plus/Minus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| || || || || |||||||| ||||| || || || || ||| Sbjct 523 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGCGAACCTGTT 464 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 ||||| || || | |||||||||||||| || || || || | | || | ||| Sbjct 463 TCCGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 404 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGTGGCTATA 26073 || || || | || ||||| || || |||||||| |||| | | || |||||| |||| Sbjct 403 GCTATTGGGTTGCACTTTTATCCAATATGGGAAGC-GGCATCGGTTGATGAGTGGTTATA 345 Query 26074 CAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGC 26133 |||||| || || ||| | || ||| | | ||||||||| | || ||||| ||| Sbjct 344 CAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATAT 285 Query 26134 AGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATA 26193 || | |||||||||| || | | || || ||| | || ||||| ||||||||| Sbjct 284 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATA 225 Query 26194 TACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAG 26253 | |||| || | | || ||| || || ||||| | || || | || ||||| || Sbjct 224 TTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAG 165 Query 26254 TTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 26313 ||| |||||| |||||||| || |||||||||||||| ||||||||| | |||||||| Sbjct 164 CTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 105 Query 26314 AGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGG 26373 || || || || || || ||||| ||||| || ||| ||||| ||||| || ||||| Sbjct 104 GGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 45 Query 26374 TGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 || | || || ||||||||| || ||||| ||||| Sbjct 44 CGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC 3 >seq190 Length=503529 Score = 217 bits (240), Expect = 4e-52 Identities = 368/531 (69%), Gaps = 3/531 (1%) Strand=Plus/Minus Query 26254 TTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 26313 |||| |||||| |||||||| | | || ||||| ||| ||||||||| | |||||||| Sbjct 35702 TTTTTCTGATGGTATGCCTCTAGTT--CTTTGGTATTTTCAACTTTATGATTGTATTCCA 35645 Query 26314 AGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGG 26373 || || ||||| || || |||||||||| || ||| ||||| ||||| |||||||| Sbjct 35644 GGCTGAGCATAACATCCTTGTGCACCCATTTCACATGTTAGGTGTAGCTGGTGTTTTCGG 35585 Query 26374 TGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAAC 26433 || | || || ||||||||| || ||||| ||||| | || |||||| Sbjct 35584 CGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGAGAAAC 35525 Query 26434 GACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAA 26493 ||| | | | || ||| | || || | || || ||||| ||||| | |||| Sbjct 35524 CACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAATTATA- 35466 Query 26494 TATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAA 26553 ||| || || || || || || ||| | |||| || || || ||||| ||||| || || Sbjct 35465 TATCGTAGCCGCTCATGGTTATTTTCGTCGATTCATCTTCCAATATGCTAGTTTCAACAA 35406 Query 26554 CAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATC 26613 |||||| | || || || | || ||||||| | || || || | | || | Sbjct 35405 TTCTCGTTCTTTACACTTATTCTTAGCGGCTTGGCCTATAGTAGGTATTCAGTTTACTGC 35346 Query 26614 TATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGT 26673 | | ||||| | || ||||| | |||||||||||||| || || ||||| || ||||| Sbjct 35345 TTTAGGTATTAGTACTATGGCTATCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGT 35286 Query 26674 AGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGG 26733 || | ||| | || ||| | |||| || | | ||||| |||||||| || Sbjct 35285 TAATAGTCTTGGTCGTGTCATTAATACCTAGGCTTATATCATTAACCGTGCTAACCTTGG 35226 Query 26734 CTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 | ||||||||||| || |||||||||||||||| || || ||| |||| Sbjct 35225 TATGGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 35175 >seq96 Length=52461754 Score = 159 bits (176), Expect = 1e-34 Identities = 269/387 (70%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| || || || || |||||||| |||| || || | || ||| Sbjct 25270655 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTAATGGTATTCGCAAACCTGTT 25270714 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 ||||| || || | |||||||||||||| || || || || | | || | ||| Sbjct 25270715 TCCGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 25270774 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGTGGCTATA 26073 || ||||| | || ||||| || || |||||||| |||| | | || |||||| |||| Sbjct 25270775 GCTATCGGGTTGCACTTTTATCCAATATGGGAAGC-GGCATCGGTTGATGAGTGGTTATA 25270833 Query 26074 CAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGC 26133 |||||| || || ||| | || ||| | | ||||||||| | || ||||| | ||| Sbjct 25270834 CAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTCTTATAT 25270893 Query 26134 AGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATA 26193 || | |||||||||| || | | || || ||| | || ||||| ||||||||| Sbjct 25270894 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTGCTGTTGCATA 25270953 Query 26194 TACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAG 26253 | |||| || | || ||| || || ||||| | || || | | ||||| || Sbjct 25270954 TTCAGCTCCGGTTGTAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGCTCAAGGAAG 25271013 Query 26254 TTTTAGTGATGGAATGCCTCTTGGTAT 26280 ||| |||||| |||||||| || || Sbjct 25271014 CTTTTCTGATGGTATGCCTCTAGGAAT 25271040 Score = 118 bits (130), Expect = 3e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 26302 || ||||| || ||| |||||| |||||| | || |||||||||||||| ||||||||| Sbjct 4492381 GGTCAAGGAAGCTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 4492440 Query 26303 TTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCT 26362 | ||||| || || || || || || || ||||||||||| || ||| ||||| | | Sbjct 4492441 ATTGTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTT 4492500 Query 26363 GGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 || || ||||| || | || || ||||||||| || ||||| ||||| Sbjct 4492501 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC 4492553 >seq20795 Length=630 Score = 123 bits (136), Expect = 7e-24 Identities = 266/392 (68%), Gaps = 8/392 (2%) Strand=Plus/Plus Query 26299 TATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGT 26358 |||| || ||||||| || || || || || || |||||||| || || ||| ||||| Sbjct 175 TATGATCATATTCCAGGCTGAGCACAACATCCTTATGCACCCGTTTCACATGTTAGGTGT 234 Query 26359 TGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTC 26418 | ||| || ||||| | | || || | |||||| || | ||||| ||||| Sbjct 235 AGTTGGTGTATTCGGCGACTCCCTGTTTGGTGCTATACATAGTTCCTTGGTAACTTCTAG 294 Query 26419 ACTTATTGCAG--AAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAA 26476 | || ||| |||| ||| | | | || ||| | || || | || || ||| Sbjct 295 TTTGAT--CAGGAAAACCACATAAAATGAATCTGCTAATGAAGGTTACATATTCGGTCAA 352 Query 26477 GATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAG 26536 || ||||| || |||||||| || || || || || || ||||| |||| || || || Sbjct 353 GAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCAA 412 Query 26537 TATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTT--TCTT-GCTACTTGGCCGGTT 26593 ||||| ||||| || || |||||| | || || || |||| | | |||||| || Sbjct 413 TATGCTAGTTTCAACAATTCTCGTTCTTTACACTTATTCTTCTTAGTTGCTTGGCTTGTA 472 Query 26594 GTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTT 26653 || | || ||| | || || | ||||| || ||||| || |||||||||||||| Sbjct 473 GTATGTATTTGGTTTACTGCTTTAGGTATTAATACTATGGCTTTCAACCTAAATGGTTTC 532 Query 26654 AACTTTAACCAGTCAGTAGTAGAT-GTTAATG 26684 || || ||||| | | ||| ||| || |||| Sbjct 533 AATTTCAACCAATTTGCAGTTGATAGTCAATG 564 >seq295 Length=224868 Score = 105 bits (116), Expect = 2e-18 Identities = 233/348 (67%), Gaps = 1/348 (0%) Strand=Plus/Plus Query 26025 TACATTTTTACCCGATCTGGGAAGCTGGCACACTG-GACGAGTGGCTATACAATGGCGGA 26083 |||| ||||| | || |||||||| | | | || |||||| ||||||||| || Sbjct 182508 TACACTTTTATTCAATATGGGAAGCAGCATCGATATGATGAGTGGTTATACAATGCTGGT 182567 Query 26084 CCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAG 26143 || ||| | || ||| | | ||||||||| | || ||| | ||| || | || Sbjct 182568 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAACTTGTTATATGGGCCGTGAG 182627 Query 26144 TGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCA 26203 ||| || | | | | ||| | | | || ||||| |||||||||| || | || Sbjct 182628 TGGAAATTTAGTGTCTGTCTAAGTAATCGCCCTTGGATTGCTGTTGCATATTCACCTCCG 182687 Query 26204 CTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGAT 26263 | | || ||| || || ||||| |||| || | || ||||| |||||| | || Sbjct 182688 GTTGCAGCGGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTAAT 182747 Query 26264 GGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACAT 26323 | |||| | | | |||||| ||||||| ||||||||| | ||||||||||| | | Sbjct 182748 GATATGCTTATAAGAATCTCTTGTACTTTCAACTTTATGATTGTATTCCAAGCTAAGTAC 182807 Query 26324 AATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371 || || || || |||||||| || ||| ||||| || | || ||| Sbjct 182808 AACATCCTTATCCACCCATTTCACATGTTAGGTGTAACTAGTGTATTC 182855 >seq170 Length=38796167 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26523 GATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTA 26582 |||| || || || ||||| ||||| || | |||||| | || ||||| | |||| Sbjct 2057926 GATTGATCTTCCAATATGCTAGTTTCAACGATTCTCGTTCTTTACACTTCTTCTTAGCTA 2057985 Query 26583 CTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACC 26642 |||||| || || || || ||| | || || | ||||| | || ||||| || |||| Sbjct 2057986 CTTGGCTTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 2058045 Query 26643 TAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||||||||| || || ||||| || ||||| ||| Sbjct 2058046 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 2058080 Score = 89.7 bits (98), Expect = 2e-13 Identities = 117/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 26630 ATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAA 26688 ||||| || |||||||||||||| || || ||||| || ||||| ||| || || || Sbjct 32379343 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA--GATC 32379400 Query 26689 GA-TAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGC 26747 | |||| ||| |||| |||| | | |||| ||||||| || | |||||||||| Sbjct 32379401 GTGTAATTAATACCTGGG-TGATATCATTAACCATGCTAACCATGGTGTCGAAGTTATGC 32379459 Query 26748 ACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 | || | |||||||||||||| || || ||| |||| Sbjct 32379460 ATGAACACAATGCTCATAACTTCCCTCTAGACCTAGC 32379496 >seq223 Length=728060 Score = 87.8 bits (96), Expect = 5e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 26302 || ||||| || ||| |||||| ||| ||| || |||||||| | ||||||||||||| Sbjct 691422 GGTCAAGGAAGCTTTTCTGATGGTATGTCTCAAGGAATCTCTGGAATTTTTAACTTTATG 691363 Query 26303 TTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATG 26350 | |||||||| || || || || || || ||||||||| | || ||| Sbjct 691362 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCACTTCACATG 691315 >seq50 Length=1444883 Score = 87.8 bits (96), Expect = 5e-13 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| || || || || |||||||| ||||| || || || || ||| Sbjct 509117 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGCGAACCTGTT 509176 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 ||||| || || | |||||||||||||| || || || || | | || | ||| Sbjct 509177 TCCGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 509236 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGTGG 26068 || || || | || ||||| || || |||||||| |||| | | || |||||| Sbjct 509237 GCTATTGGGTTGCACTTTTATCCAATATGGGAAGC-GGCATCGGTTGATGAGTGG 509290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146656276335504