Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq26327 327 3e-85 seq96 223 1e-53 seq190 210 7e-50 seq295 143 8e-30 seq20795 131 5e-26 seq50 109 2e-19 seq223 104 7e-18 seq252 102 2e-17 seq1964 95.1 4e-15 seq170 91.5 4e-14 >seq26327 Length=568 Score = 327 bits (362), Expect = 3e-85 Identities = 403/551 (73%), Gaps = 0/551 (0%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| |||| | || |||||||| || || ||||| | ||| || || Sbjct 18 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 77 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 |||||||||||||| ||||| || ||||| || |||| |||||| |||||||| || || Sbjct 78 GGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 137 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || ||||||||||||||||| || || ||||| |||| ||||||| ||||| ||| Sbjct 138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 197 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGT 36596 ||| || |||||||| || |||||||| || ||| ||||| || | |||||| || Sbjct 198 GCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 257 Query 36597 CTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAAC 36656 | ||||||||||||| | || |||| ||| | | ||||| | ||||| | Sbjct 258 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 317 Query 36657 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 36716 ||||| || | ||| || || || || ||||||||||| || | | ||| |||||||| Sbjct 318 ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 377 Query 36717 ATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATG 36776 ||||| || ||||| | || || || || | || | || || ||||| || || Sbjct 378 ATTGGATAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATA 437 Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 |||||||| || |||| | ||| || ||||| || ||||||||||| ||||| || ||| Sbjct 438 TTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTCGCGAATACCATCAATATCTACTGGA 497 Query 36837 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 36896 || ||||||| || || || | |||| | | ||| || || | | ||||||||| Sbjct 498 GGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATC 557 Query 36897 AGTACCCCAAA 36907 | || ||||| Sbjct 558 AAAACACCAAA 568 >seq96 Length=52461754 Score = 223 bits (246), Expect = 1e-53 Identities = 308/431 (71%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || ||||||||||||||||| || || ||||| ||| ||||||| ||||| ||| Sbjct 25271040 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGAGCAATTGGGTAGATCAAGAAAACA 25270981 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGT 36596 ||| || ||| |||| || |||||||| || ||| ||||| || | |||||| || Sbjct 25270980 GCAGTAGCCGCTACAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGA 25270921 Query 36597 CTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAAC 36656 | ||||||||||||| | || |||| |||| | | ||||| | ||||| | Sbjct 25270920 CGGAAACTAAGTTCCCACTCACGACCCATATAAGAAGCTACACCAAGTAAGAAGTGTAGA 25270861 Query 36657 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 36716 ||||| || | ||| || || || || ||||||||||| || | | ||| |||||||| Sbjct 25270860 ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 25270801 Query 36717 ATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATG 36776 ||||| || ||||| | ||||| || || | || | || || ||||| || || Sbjct 25270800 ATTGGATAAAAGTGCAACCCGATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATA 25270741 Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 |||||||| || |||| | ||| || ||||| | |||||||||| ||||| || ||| Sbjct 25270740 TTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTTGCGAATACCATTAATATCTACTGGA 25270681 Query 36837 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 36896 || ||||||| || || || | |||| | | ||| || || | | ||||||||| Sbjct 25270680 GGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATC 25270621 Query 36897 AGTACCCCAAA 36907 | || ||||| Sbjct 25270620 AAAACACCAAA 25270610 Score = 150 bits (166), Expect = 5e-32 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| |||| | || |||||||| || | ||||| | ||| || || Sbjct 4492538 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAACTACACCTAACATGTGAAAT 4492479 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || ||||||||||| ||||| || |||||||| |||| |||||| |||||||| || || Sbjct 4492478 GGGTGCATAAGGATGTTGTGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAG 4492419 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA----AAGGGTAGACTAAGAA 36532 || || | ||||||||||||| | || || ||||| |||| ||||||| ||||| Sbjct 4492418 ATTCCTAAAGGCATACCATCAAAAAAGCTTCCTTGACCAATTGGCCGGGTAGATCAAGAA 4492359 Query 36533 TACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGG 36583 |||||| || | | |||| || |||||||| || ||| ||||| || Sbjct 4492358 AACAGCAGTAGCCGTTACAACCGGAGCTGAATATGCAACAGCAATCCAAGG 4492308 >seq190 Length=503529 Score = 210 bits (232), Expect = 7e-50 Identities = 369/535 (69%), Gaps = 3/535 (1%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || |||| ||||||||||||||||| || | Sbjct 35171 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAG 35230 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || | |||| | || | ||| | || || ||| || Sbjct 35231 GTTAGCACGGTTAATGATATAAGCCTAGGTATTAATGACACGACCAAGACTATTAACTAC 35290 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || | ||||||||| | || | ||| || Sbjct 35291 AGATTGGTTGAAATTGAAACCATTTAGGTTGATAGCCATAGTACTAATACCTAAAGCAGT 35350 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || | || | | |||||||| || | ||| || |||||| || ||| || Sbjct 35351 AAACTGAATACCTACTATAGGCCAAGCCGCTAAGAATAAGTGTAAAGAACGAGAATTGTT 35410 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||||| || | ||| || |||||||| || || || |||| Sbjct 35411 GAAACTAGCATATTGGAAGATGAATCGACGAAAATAACCATGAGCGGCTACGAT-ATATA 35469 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 | ||||| ||||| |||||| | || || | || ||||||| || ||||| Sbjct 35470 ATTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTC 35529 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| |||| | || ||||| Sbjct 35530 TCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 35589 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 || || || ||||| | ||| || || || |||| |||||| || || || ||||| || Sbjct 35590 AACACCAGCTACACCTAACATGTGAAATGGGTGCACAAGGATGTTATGCTCAGCCTGGAA 35649 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 |||| |||||| |||||| | || ||| | | ||||||||||||||||| ||| Sbjct 35650 TACAATCATAAAGTTGAAAATACC--AAAGAACTAGAGGCATACCATCAGAAAAA 35702 >seq295 Length=224868 Score = 143 bits (158), Expect = 8e-30 Identities = 240/346 (69%), Gaps = 1/346 (0%) Strand=Plus/Minus Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| | | ||||| | ||| || || || || |||||||| |||| | || || Sbjct 182855 GAATACACTAGTTACACCTAACATGTGAAATGGGTGGATAAGGATGTTGTACTTAGCTTG 182796 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| |||||| |||||||| | || || | | | ||||| ||| ||| ||||| Sbjct 182795 GAATACAATCATAAAGTTGAAAGTACAAGAGATTCTTATAAGCATATCATTAGAAAAACT 182736 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| |||| ||||| | ||||| |||||| || |||||||| || | |||||| Sbjct 182735 TCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGGTGAATA 182676 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625 || ||| ||||| || | ||| ||| | ||||| || ||| | || |||| Sbjct 182675 TGCAACAGCAATCCAAGGGCGATTACTTAGACAGACACTAAATTTCCACTCACGGCCCAT 182616 Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685 ||| | | ||||| | ||||| | ||||| || | ||| || || | || || Sbjct 182615 ATAACAAGTTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCAGCATTGTA 182556 Query 36686 TAACCACTCGTC-GAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 36730 ||||||||| || | | ||| |||||||| |||| || ||||| Sbjct 182555 TAACCACTCATCATATCGATGCTGCTTCCCATATTGAATAAAAGTG 182510 >seq20795 Length=630 Score = 131 bits (144), Expect = 5e-26 Identities = 256/375 (68%), Gaps = 9/375 (2%) Strand=Plus/Minus Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| | | || ||||| || || || || || || ||||||||||| | || Sbjct 556 ATCAACTGCAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTATTAATACC 497 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAG---AAATGTAAACT 36196 | ||| |||| ||| || || || |||||||| | | |||| || |||||| Sbjct 496 TAAAGCAGTAAACCAAATACATACTACAAGCCAAGCAACTAAGAAGAATAAGTGTAAAGA 437 Query 36197 GCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 36256 || ||| || || |||||||| |||||||| | || ||||| || |||||||| || Sbjct 436 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCGGC 377 Query 36257 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 36316 || || ||||| || ||||| ||||| |||||| | || || | || ||||||| Sbjct 376 TACGATATTATAAGTTTCTTCCTCTTGACCGAATATGTAACCTTCATTAGCAGATTCATT 317 Query 36317 CCCAGTTG-TTTCACGAATAAGTGAGGAAGTAACAAG--ACTTCCGTGCATAGCAGCGAA 36373 || | |||| || || || | || |||| ||| || |||||| | || Sbjct 316 TTATGTGGTTTTCCTGATCAAACTAGAAGTTACCAAGGAACT---ATGTATAGCACCAAA 260 Query 36374 TAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 36433 | | | |||||||| || | ||||| | ||| || ||||| ||||||||||| || Sbjct 259 CAGGGAGTCGCCGAATACACCAACTACACCTAACATGTGAAACGGGTGCATAAGGATGTT 200 Query 36434 GTGTTCTGCCTGAAA 36448 ||| || ||||| || Sbjct 199 GTGCTCAGCCTGGAA 185 >seq50 Length=1444883 Score = 109 bits (120), Expect = 2e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 36688 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCG 36747 ||||||| || | | ||| |||||||| ||||| || ||||| | || || || | Sbjct 509291 ACCACTCATCAACCGATGCCGCTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAG 509232 Query 36748 ATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 36807 | | || | || || ||||| || || |||||||| || |||| | ||| || |||| Sbjct 509231 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAG 509172 Query 36808 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 36867 | || ||||||||||| ||||| || ||||| ||||||| || || || | |||| | | Sbjct 509171 GTTCGCGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAG 509112 Query 36868 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAA 36907 ||| || || | | ||||||||| | || ||||| Sbjct 509111 AATTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAA 509072 >seq223 Length=728060 Score = 104 bits (114), Expect = 7e-18 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 36360 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 36419 ||||||||| ||||| || | ||||| || || | || | ||| || | || Sbjct 691268 TGCATAGCACTAAATAAGAAGCCGTCAAATACACCAGCTATTCCTAACATGTGAAGTGGG 691327 Query 36420 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 36479 ||||||||||| ||||| || ||||| || |||| |||||| || ||| | || || || Sbjct 691328 TGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTAAAAATTCCAGAGATT 691387 Query 36480 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA--- 36536 || ||| |||||||||||| || || ||||| |||| | ||||| | ||| ||| Sbjct 691388 CCTTGAGACATACCATCAGAAAAGCTTCCTTGACCAATTGAGTAGATCACGAAAACAACA 691447 Query 36537 -GCAAATGCTGCTGCAACAGGGGCT 36560 ||| || |||||||| || ||| Sbjct 691448 TGCAGTAGCCGCTGCAACCGGAGCT 691472 >seq252 Length=353890 Score = 102 bits (112), Expect = 2e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 |||| ||| || || || |||| | ||| || || | ||||||||||| ||||| || Sbjct 38867 CCACTGAA-ACACCAGCTGCACCTAACATGTGAAATTGGTGCATAAGGATGTTGTGCTCA 38925 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 |||| || |||| |||||| |||||||| || | || || |||||||||||||||| Sbjct 38926 GCCTAGAATACAATCATAAAGTTGAAAGTACCAAAGATTCCTAGAGGCATACCATCAGTA 38985 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 36538 |||| |||| |||| | ||||| ||||| ||||| Sbjct 38986 TAACTTTCTTG-CCAATTGAGTAGATCAAGAAAACAGC 39022 >seq1964 Length=2038 Score = 95.1 bits (104), Expect = 4e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224 || ||||||||||| | |||||| |||||| | ||| || || |||||||| ||| Sbjct 801 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAATGAGAATTGTTTAAACTAGCATATTGG 742 Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284 ||||| | || ||||| || |||||| | || ||||| | ||| || ||||| ||||| Sbjct 741 AAGATCAATCGACCAAAATAACCATGAACGGCTACAATATCATAAGTTTCTTCCTCTTGA 682 Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCA 36314 |||||| | || || | || ||||||| Sbjct 681 CCGAATCTGTAACCTTCATTAGCAGATTCA 652 >seq170 Length=38796167 Score = 91.5 bits (100), Expect = 4e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || || Sbjct 38010972 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAA 38011031 Query 36029 GTCGGCACGGTTAAGAATGTCAGCC 36053 || |||||||||| || |||||| Sbjct 38011032 GTTAGCACGGTTAATGATATCAGCC 38011056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150382494645084