Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq26327 313 8e-81 seq190 212 2e-50 seq96 210 7e-50 seq20795 134 4e-27 seq50 109 2e-19 seq223 104 7e-18 seq252 102 2e-17 seq1964 100 9e-17 seq170 87.8 5e-13 >seq26327 Length=568 Score = 313 bits (346), Expect = 8e-81 Identities = 400/551 (73%), Gaps = 0/551 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| |||| | || |||||||| || || ||||| | ||| || || Sbjct 18 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 77 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 |||||||||||||| ||||| || ||||| || |||| |||||| |||||||| || || Sbjct 78 GGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 137 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || ||||||||||||||||| || || ||||| |||| ||||||| ||||| ||| Sbjct 138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 197 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGT 26076 ||| || |||||||| || |||||||| || ||| ||||| || | ||| || || Sbjct 198 GCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 257 Query 26077 CTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAAC 26136 | ||||||||||||| | || |||| ||| | | || | | ||||| | Sbjct 258 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 317 Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| || | ||| || ||||| || || |||||||| || | | ||| |||||||| Sbjct 318 ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 377 Query 26197 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATG 26256 ||||| || ||||| | || || || ||| | || | || || || || || || Sbjct 378 ATTGGATAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATA 437 Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 |||||||| || |||| | ||| || ||||| || ||||||||||| ||||| || ||| Sbjct 438 TTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTCGCGAATACCATCAATATCTACTGGA 497 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 26376 || ||||||| || || || | |||| | | ||| || || | | ||||||||| Sbjct 498 GGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATC 557 Query 26377 AGTACCCCAAA 26387 | || ||||| Sbjct 558 AAAACACCAAA 568 >seq190 Length=503529 Score = 212 bits (234), Expect = 2e-50 Identities = 367/531 (69%), Gaps = 3/531 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || |||| ||||||||||||||||| || | || Sbjct 35175 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 35234 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || | |||| | || | ||| | || || ||| || || Sbjct 35235 GCACGGTTAATGATATAAGCCTAGGTATTAATGACACGACCAAGACTATTAACTACAGAT 35294 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || | ||||||||| | || | ||| |||| | Sbjct 35295 TGGTTGAAATTGAAACCATTTAGGTTGATAGCCATAGTACTAATACCTAAAGCAGTAAAC 35354 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || | | |||||||| || | ||| || |||||| ||| ||| || || Sbjct 35355 TGAATACCTACTATAGGCCAAGCCGCTAAGAATAAGTGTAAAGAACGAGAATTGTTGAAA 35414 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||||| || | ||| || |||||||| || || || |||| | Sbjct 35415 CTAGCATATTGGAAGATGAATCGACGAAAATAACCATGAGCGGCTACGAT-ATATAATTT 35473 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| || ||||| | Sbjct 35474 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCTCTG 35533 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| |||| | || ||||| || Sbjct 35534 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAAACA 35593 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || || || |||| |||||| || || || ||||| || ||| Sbjct 35594 CCAGCTACACCTAACATGTGAAATGGGTGCACAAGGATGTTATGCTCAGCCTGGAATACA 35653 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 | |||||| |||||| | || ||| | | ||||||||||||||||| ||| Sbjct 35654 ATCATAAAGTTGAAAATACC--AAAGAACTAGAGGCATACCATCAGAAAAA 35702 >seq96 Length=52461754 Score = 210 bits (232), Expect = 7e-50 Identities = 305/431 (71%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || ||||||||||||||||| || || ||||| ||| ||||||| ||||| ||| Sbjct 25271040 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGAGCAATTGGGTAGATCAAGAAAACA 25270981 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGT 26076 ||| || ||| |||| || |||||||| || ||| ||||| || | ||| || || Sbjct 25270980 GCAGTAGCCGCTACAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGA 25270921 Query 26077 CTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAAC 26136 | ||||||||||||| | || |||| |||| | | || | | ||||| | Sbjct 25270920 CGGAAACTAAGTTCCCACTCACGACCCATATAAGAAGCTACACCAAGTAAGAAGTGTAGA 25270861 Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| || | ||| || ||||| || || |||||||| || | | ||| |||||||| Sbjct 25270860 ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 25270801 Query 26197 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATG 26256 ||||| || ||||| | ||||| || ||| | || | || || || || || || Sbjct 25270800 ATTGGATAAAAGTGCAACCCGATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATA 25270741 Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 |||||||| || |||| | ||| || ||||| | |||||||||| ||||| || ||| Sbjct 25270740 TTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTTGCGAATACCATTAATATCTACTGGA 25270681 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 26376 || ||||||| || || || | |||| | | ||| || || | | ||||||||| Sbjct 25270680 GGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATC 25270621 Query 26377 AGTACCCCAAA 26387 | || ||||| Sbjct 25270620 AAAACACCAAA 25270610 Score = 150 bits (166), Expect = 5e-32 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| |||| | || |||||||| || | ||||| | ||| || || Sbjct 4492538 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAACTACACCTAACATGTGAAAT 4492479 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || ||||||||||| ||||| || |||||||| |||| |||||| |||||||| || || Sbjct 4492478 GGGTGCATAAGGATGTTGTGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAG 4492419 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA----AAGGGTAGACTAAGAA 26012 || || | ||||||||||||| | || || ||||| |||| ||||||| ||||| Sbjct 4492418 ATTCCTAAAGGCATACCATCAAAAAAGCTTCCTTGACCAATTGGCCGGGTAGATCAAGAA 4492359 Query 26013 TACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGG 26063 |||||| || | | |||| || |||||||| || ||| ||||| || Sbjct 4492358 AACAGCAGTAGCCGTTACAACCGGAGCTGAATATGCAACAGCAATCCAAGG 4492308 >seq20795 Length=630 Score = 134 bits (148), Expect = 4e-27 Identities = 257/375 (69%), Gaps = 9/375 (2%) Strand=Plus/Minus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 |||||| | | || ||||| || || || || || || ||||||||||| | || Sbjct 556 ATCAACTGCAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTATTAATACC 497 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAG---AAATGTAAACT 25676 | ||| |||| ||| || || || |||||||| | | |||| || |||||| Sbjct 496 TAAAGCAGTAAACCAAATACATACTACAAGCCAAGCAACTAAGAAGAATAAGTGTAAAGA 437 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || |||||||| |||||||| | || ||||| || |||||||| || Sbjct 436 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCGGC 377 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 || || ||||| || ||||| ||||| |||||| | || || | || ||||||| Sbjct 376 TACGATATTATAAGTTTCTTCCTCTTGACCGAATATGTAACCTTCATTAGCAGATTCATT 317 Query 25797 CCCAGTTG-TTTCACGAATAAGTGAGGAAGTAACAAG--ACTTCCGTGCATAGCAGCGAA 25853 || | |||| || || || | || |||| ||| || |||||| | || Sbjct 316 TTATGTGGTTTTCCTGATCAAACTAGAAGTTACCAAGGAACT---ATGTATAGCACCAAA 260 Query 25854 TAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 25913 | | | |||||||| || | ||||| | ||| || ||||| ||||||||||| || Sbjct 259 CAGGGAGTCGCCGAATACACCAACTACACCTAACATGTGAAACGGGTGCATAAGGATGTT 200 Query 25914 GTGTTCTGCCTGAAA 25928 ||| || ||||| || Sbjct 199 GTGCTCAGCCTGGAA 185 >seq50 Length=1444883 Score = 109 bits (120), Expect = 2e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 ||||||| || | | ||| |||||||| ||||| || ||||| | || || || || Sbjct 509291 ACCACTCATCAACCGATGCCGCTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAG 509232 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | | || | || || || || || || |||||||| || |||| | ||| || |||| Sbjct 509231 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAG 509172 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 | || ||||||||||| ||||| || ||||| ||||||| || || || | |||| | | Sbjct 509171 GTTCGCGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAG 509112 Query 26348 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAA 26387 ||| || || | | ||||||||| | || ||||| Sbjct 509111 AATTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAA 509072 >seq223 Length=728060 Score = 104 bits (114), Expect = 7e-18 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 25840 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 25899 ||||||||| ||||| || | ||||| || || | || | ||| || | || Sbjct 691268 TGCATAGCACTAAATAAGAAGCCGTCAAATACACCAGCTATTCCTAACATGTGAAGTGGG 691327 Query 25900 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 25959 ||||||||||| ||||| || ||||| || |||| |||||| || ||| | || || || Sbjct 691328 TGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTAAAAATTCCAGAGATT 691387 Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA--- 26016 || ||| |||||||||||| || || ||||| |||| | ||||| | ||| ||| Sbjct 691388 CCTTGAGACATACCATCAGAAAAGCTTCCTTGACCAATTGAGTAGATCACGAAAACAACA 691447 Query 26017 -GCAAATGCTGCTGCAACAGGGGCT 26040 ||| || |||||||| || ||| Sbjct 691448 TGCAGTAGCCGCTGCAACCGGAGCT 691472 >seq252 Length=353890 Score = 102 bits (112), Expect = 2e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 |||| ||| || || || |||| | ||| || || | ||||||||||| ||||| || Sbjct 38867 CCACTGAA-ACACCAGCTGCACCTAACATGTGAAATTGGTGCATAAGGATGTTGTGCTCA 38925 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 |||| || |||| |||||| |||||||| || | || || |||||||||||||||| Sbjct 38926 GCCTAGAATACAATCATAAAGTTGAAAGTACCAAAGATTCCTAGAGGCATACCATCAGTA 38985 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 26018 |||| |||| |||| | ||||| ||||| ||||| Sbjct 38986 TAACTTTCTTG-CCAATTGAGTAGATCAAGAAAACAGC 39022 >seq1964 Length=2038 Score = 100 bits (110), Expect = 9e-17 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||| | |||||| |||||| | | ||| || || |||||||| ||| Sbjct 801 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAATGAGAATTGTTTAAACTAGCATATTGG 742 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 ||||| | || ||||| || |||||| | || ||||| | ||| || ||||| ||||| Sbjct 741 AAGATCAATCGACCAAAATAACCATGAACGGCTACAATATCATAAGTTTCTTCCTCTTGA 682 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCA 25794 |||||| | || || | || ||||||| Sbjct 681 CCGAATCTGTAACCTTCATTAGCAGATTCA 652 >seq170 Length=38796167 Score = 87.8 bits (96), Expect = 5e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || |||| Sbjct 38010976 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 38011035 Query 25513 GCACGGTTAAGAATGTCAGCC 25533 |||||||||| || |||||| Sbjct 38011036 GCACGGTTAATGATATCAGCC 38011056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151920959028696