Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq127 138 1e-27 >seq127 Length=60962716 Score = 138 bits (152), Expect = 1e-27 Identities = 355/532 (67%), Gaps = 9/532 (2%) Strand=Plus/Plus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||||||||| |||||||||||||| | ||||| |||| | ||||||||||| |||| Sbjct 5746928 ACAATAAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAA 5746987 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCA 37286 | ||||| || ||||||| || | || |||| |||||| | || ||| ||| ||| Sbjct 5746988 ACGTTAAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAA-AATGGAGCAGAAACTTCCT 5747046 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || ||||| || ||||||| ||||| || | | | | | | | || ||| | Sbjct 5747047 GAGAAGAATATCCCTTCAATACAAGCAAACGCAATTA-TCCTCT-CTGCAA-ATGATTCA 5747103 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | || |||||| | || |||||| ||||| ||| ||||| | ||||| Sbjct 5747104 GACCCATCAATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCG 5747163 Query 37407 ATTGCTTTTAAGAG--AAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||||| ||||| | ||||| | | ||| | || ||||| || | || | Sbjct 5747164 ATTGCTCGAAAGAGGTGAGATTTTTGGGATGA--ATCCTTAATGTAAGTTTCTAAAAGGA 5747221 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 ||||||||||| ||||| |||||||| || || |||||||| ||||| | | Sbjct 5747222 GTGAGTACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCG 5747281 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||||| | ||| || || || | ||||| || | ||||| || || |||| Sbjct 5747282 CTTCAGCGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCAT 5747341 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644 | || || ||||| || ||||| | | | || |||||| | || || | || Sbjct 5747342 CTGATGCGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGG 5747401 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| ||| | | | ||| ||||| ||| ||||| ||| | |||||||| Sbjct 5747402 TTTCCCAGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAA 5747453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592018820225840