Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq3706 109 6e-19 seq32734 87.8 2e-12 seq31027 86.0 7e-12 seq32383 82.4 8e-11 >seq3706 Length=935 Score = 109 bits (120), Expect = 6e-19 Identities = 90/107 (84%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 75945 TGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAACC 76004 ||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||| ||| Sbjct 439 TGGTGGGCCGCCCCAGACTCGAACTGGGAACCTACGGATTAAGAGTCCGCTGCTCT-ACC 381 Query 76005 AATTGAGCTAAAGGCCCAAAAATGGTCCGCCTGACAGGATTCGAACC 76051 |||||||||| ||||| | |||| | ||| ||||||||||| Sbjct 380 AATTGAGCTAGCGGCCC-ACGATGGGGTGGATGATGGGATTCGAACC 335 >seq32734 Length=509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 73887 TGGTGCCGACACGAGGATTTGAACCCCGGACCCTCTGATTACAAAACAGACGCTCTACCA 73946 |||||||| ||| |||| | |||||| ||||| ||||||||||| ||| ||||||||| Sbjct 343 TGGTGCCGGCACCAGGAATCGAACCCGGGACCTGCTGATTACAAATCAGCTGCTCTACCA 402 Query 73947 ACTGAGCTATGACGGC 73962 ||||||||||| |||| Sbjct 403 ACTGAGCTATGCCGGC 418 >seq31027 Length=523 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 73887 TGGTGCCGACACGAGGATTTGAACCCCGGACCCTCTGATTACAAAACAGACGCTCTACCA 73946 ||||||| ||| |||| | |||||| |||||| ||||||||||| ||| ||||||||| Sbjct 284 TGGTGCCCCCACCAGGACTCGAACCCGGGACCCCCTGATTACAAATCAGGTGCTCTACCA 343 Query 73947 ACTGAGCTATGACGGCA 73963 |||||||||| | |||| Sbjct 344 ACTGAGCTATAAGGGCA 360 >seq32383 Length=505 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 73882 AATT-CTGGTGCCGACACGAG-GATTTGAACCCCGGACCCTCTGATTACAAAACAGACGC 73939 |||| |||||||| || ||| || | |||| || ||||||||||||||||| |||| || Sbjct 469 AATTGCTGGTGCCCCCA-GAGAGACTCGAACTCCCGACCCTCTGATTACAAATCAGATGC 411 Query 73940 TCTACCAACTGAGCTATGACGGCA 73963 ||||||||||||||||| | |||| Sbjct 410 TCTACCAACTGAGCTATAAGGGCA 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533002124993520