Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq58 143 2e-29 seq157 138 9e-28 seq57 131 1e-25 seq1 123 2e-23 seq145 93.3 3e-14 seq180 87.8 1e-12 >seq58 Length=2649046 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || ||||| | ||| ||||||||||| ||||| || || ||||||||||| || Sbjct 1147153 CCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCC 1147094 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | |||||||| ||||| ||||| | ||| || || || ||| Sbjct 1147093 AAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 1147034 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || ||||| || || ||| | || | || || || |||| ||| Sbjct 1147033 ATACCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCAACT 1146974 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | ||| || ||||| | ||| || ||||| || ||||| Sbjct 1146973 TCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || ||||| | || || ||||||||||| || ||||| ||||||||||| | Sbjct 1147611 TTCCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCG 1147552 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| || |||| || | |||||||| ||||| ||||| | ||| || || || | Sbjct 1147551 CAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 1147492 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || ||||| || || ||| || ||| | || | ||||| || | || | Sbjct 1147491 GAATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAA 1147432 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||||| || || ||||| || || || ||||| |||||||| Sbjct 1147431 CCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||||||||| | || | ||| || || || || ||||| || ||||| |||||| Sbjct 1146697 CCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1146638 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | | || || | ||| || || ||||| || ||||| |||||||| || ||| Sbjct 1146637 AGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGA 1146578 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || ||| ||||| | || | ||||| || | || || Sbjct 1146577 ATTCCTTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACC 1146518 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || |||||||| | ||||| || || || ||||| Sbjct 1146517 TCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || |||||||||||||||| |||| | || || | ||| Sbjct 1146901 TGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGC 1146842 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| | || || || || ||||||||||| || ||||||||||| Sbjct 1146841 TTTCCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATTTTG 1146782 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | ||| || || |||| |||||||| |||| || ||||| || Sbjct 1146781 GCTTTGACGTTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTA 1146722 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 1146721 AGAGTCTTGACGAAGATCTGCAT 1146699 >seq157 Length=426068 Score = 138 bits (152), Expect = 9e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || ||||||||||| || | |||| | |||| || | ||| Sbjct 398032 ATGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTG 397973 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||| ||| || || || || |||||||| || || |||||||| || Sbjct 397972 CTTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTT 397913 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | || ||||| | ||||| || ||||||| ||| || || || Sbjct 397912 TGCCTTAACATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGT 397853 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || ||||| Sbjct 397852 CAAGGTCTTAACAAAGATTTGCAT 397829 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || ||||| ||||| || | ||| | |||| || | ||| Sbjct 398259 TGGAGGGTAGACTCCTTCTGGATATTATAATCAGCTAGAGTACGACCATCCTCGAGTTGT 398200 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | |||||| || || ||||| ||||| || ||||||||||| Sbjct 398199 TTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGAATTTTA 398140 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||| |||| || ||||| || | || || || ||| Sbjct 398139 GCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTTCCCTGTT 398080 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| ||||| || |||||| Sbjct 398079 AGGGTTTTGACAAAGATTTGCATG 398056 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||||||||||||||| || ||||| ||||||||||| || | ||| | |||| || Sbjct 398493 ACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCCAAAGTACGACCATCCTCA 398434 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||||||| ||||| || | | ||||||||| || || || ||||| || ||||| Sbjct 398433 AGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGT 398374 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || ||||| | || || || | ||| | || || Sbjct 398373 ATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTT 398314 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || ||||| || ||||| Sbjct 398313 CCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 >seq57 Length=33024243 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | ||| | ||||| || || ||||| || || |||||||| || Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 18658291 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||| || || || || |||| ||| ||||| || || ||| Sbjct 18658292 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGA 18658351 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || ||| ||| ||| | || | ||||| || | ||| ||| Sbjct 18658352 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGGATTCGACT 18658411 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || |||| ||||| || || |||||||| Sbjct 18658412 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458 >seq1 Length=34941034 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || ||||| || | ||| || || ||||| || || ||||| || |||||||| || Sbjct 3649790 CCACCCCTTAAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT 3649731 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||||||||| || ||||| || | | || || || || || Sbjct 3649730 AGAGTCCGACCATCTTCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3649671 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| ||||||| || ||| | || | |||||| || |||| || Sbjct 3649670 ATACCCTCCTTATCAGTAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACC 3649611 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| || ||||| || | || || ||||| ||||||||| Sbjct 3649610 TCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATG 3649563 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || ||||||||||| || | ||||| |||| ||||| ||| Sbjct 3650678 TGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCCAGAGTTCGCCCATCCTCCAACTGC 3650619 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| ||||| || || || ||||| || || ||||| || Sbjct 3650618 TTCCCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTG 3650559 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||||| | ||||| ||||| |||| || || || || Sbjct 3650558 GTCTTCACATTATCAATTGTATCAGAACTCTCCACCTCAAGGGTGATAGTCTTCCCAGTG 3650499 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 3650498 AGGGTCTTCACAAAGATCTGCAT 3650476 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || ||||| | ||| | || | || || || || || || |||||||| || Sbjct 3650246 CCTCCCCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCC 3650187 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| || | || ||||| ||||| || | | |||||| || | ||| Sbjct 3650186 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGA 3650127 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||| ||| || || ||| | || | || || || |||| ||| Sbjct 3650126 ATGCCTTCCTTGTCTGTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACT 3650067 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | ||| || ||||| ||||||||| Sbjct 3650066 TCCAGTGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATG 3650019 >seq145 Length=44152522 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | ||| | ||||| || || ||||| || || |||||||| || Sbjct 33200774 CCACCTCTGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCA 33200715 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||| || || || || |||| ||| ||||| | || ||| Sbjct 33200714 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTGGA 33200655 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGT 101408 ||||||||||||||||| || ||| ||| ||| | || | |||| Sbjct 33200654 ATGCCTTCTTTATCTTGGATCTTTGCTTTCACATTGTCGATGGTGT 33200609 >seq180 Length=370853 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | ||| | ||||| || || ||||| || || |||||||| || Sbjct 23745 CCACCTCTGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 23686 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||| || || || || |||| ||| ||||| | || ||| Sbjct 23685 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTGGA 23626 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGT 101408 ||||||||||| ||||| || ||| ||| ||| | || | |||| Sbjct 23625 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGT 23580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396084026187822