Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq157 116 3e-21 seq58 95.1 9e-15 seq146 91.5 1e-13 seq1 91.5 1e-13 seq257 82.4 6e-11 seq145 82.4 6e-11 >seq157 Length=426068 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| || ||||||| || | ||| | || |||||||||||||||||||| Sbjct 398931 TCCTTCTGAATGTTATAATCAGCGAGGGTACGACCATCTTCCAACTGCTTACCGGCAAAA 398872 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| | ||| ||||| | || | || |||||||| |||||| ||| ||| | Sbjct 398871 ATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGTATCTTTGTTTTCACATTA 398812 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| || ||||| ||||| || | ||| || || Sbjct 398811 TCAATAGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACG 398752 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 398751 AAAATCTGCATC 398740 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||||||||||| || |||| | || || | |||||||||||||| Sbjct 398020 CTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAA 397961 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| || || || || | |||| |||||||||||| ||||||| || ||| Sbjct 397960 GATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTAACATT 397901 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||| | || ||||| || || ||||| || || || Sbjct 397900 GTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCTTAAC 397841 Query 48755 AAAAATCTGCATC 48767 ||| || |||||| Sbjct 397840 AAAGATTTGCATC 397828 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || ||| ||||| ||||||||||| | | | | ||| | || || Sbjct 398493 ACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCCAAAGTACGACCATCCTCA 398434 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||||||||| || || | ||||||||| | || | || |||||||| Sbjct 398433 AGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGT 398374 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || ||| ||||||| ||||| || ||| Sbjct 398373 ATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTT 398314 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||| || ||||| || |||||| Sbjct 398313 CCAGTGAGAGTCTTGACAAAGATTTGCATC 398284 >seq58 Length=2649046 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||| || || || ||| ||||| ||||||||||| | Sbjct 1147609 CCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 1147550 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | || || | ||||||||| ||||| |||| | ||| || || | |||| Sbjct 1147549 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 1147490 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || |||||| || ||| | | | || || ||| ||| Sbjct 1147489 ATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAACC 1147430 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || ||||| || || |||||||||||||| Sbjct 1147429 TCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 >seq146 Length=1334862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | |||||| || ||||| ||||| ||||| |||||||| | ||| ||| Sbjct 1120086 AGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTT 1120027 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || ||||| || ||||| || |||||||| | |||| || || Sbjct 1120026 CCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCT 1119967 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| || | | | || || | ||||| || | || Sbjct 1119966 TTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACTTCTAGGGTT 1119907 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||||| || ||||||||||| Sbjct 1119906 ATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq1 Length=34941034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||||||||| | ||| |||| | || ||||||||||| || ||||| Sbjct 3650667 CTCCTTCTGAATATTGTAATCTGCCAGAGTTCGCCCATCCTCCAACTGCTTCCCAGCAAA 3650608 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||| ||| ||||| | || | || |||||||| |||||| || ||| Sbjct 3650607 GATGAGTCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTGGTCTTCACATT 3650548 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||| | || || || || || || | || || || Sbjct 3650547 ATCAATTGTATCAGAACTCTCCACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTCAC 3650488 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 3650487 AAAGATCTGCATC 3650475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||||||| || || || ||||| || ||||| || | Sbjct 3649563 GCCACCCCTGAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGC 3649504 Query 48599 TAGACTTCGATCG-TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || || || || || |||| || || || ||||| ||||| | ||| ||||| | | Sbjct 3649503 TA-ACGTCCTTCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTG 3649445 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| ||||||||||| ||||| || ||| | | | | ||||| ||| | Sbjct 3649444 GAATCCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATTGTGTCTGAGCTCTCGA 3649385 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | || | ||||| || ||||| || | |||||| ||||| || |||||| Sbjct 3649384 CTTCGAGAGTAATAGTCTTTCCGGTGAGAGTTTTCACAAAGATTTGCATC 3649335 >seq257 Length=328955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| || ||||| | || | ||| | || |||||||||||||||||||| Sbjct 268789 TCCTTCTGAATGTTATAATCGGCAAGGGTACGACCATCTTCCAACTGCTTACCGGCAAAA 268730 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| | ||| ||||| | || | || |||||||| |||||| ||| ||| | Sbjct 268729 ATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGTATCTTTGTTTTAACATTA 268670 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 | | || || || ||| ||||||| || ||||| |||| Sbjct 268669 TCAATAGTATCCGAGCTCTCAACCTCCAGAGTGATCGTCTTTC 268627 >seq145 Length=44152522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| || ||||| | || | ||| | || |||||||||||||||||||| Sbjct 18651179 TCCTTCTGAATGTTATAATCGGCAAGGGTACGACCATCTTCCAACTGCTTACCGGCAAAA 18651238 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| | ||| ||||| | || | || |||||||| |||||| ||| ||| | Sbjct 18651239 ATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGTATCTTTGTTTTAACATTA 18651298 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 | | || || || ||| ||||||| || ||||| |||| Sbjct 18651299 TCAATAGTATCCGAGCTCTCAACCTCCAGAGTGATCGTCTTTC 18651341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380750750821458