Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq39402 154 2e-32 seq20256 105 9e-18 seq15917 87.8 2e-12 seq9315 84.2 3e-11 >seq39402 Length=1059 Score = 154 bits (170), Expect = 2e-32 Identities = 249/348 (72%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 137098 ACCCGGACCATCATCATCTCGCGGTTGATCCGCG-CGAAGTCCTGGCCCCAGGCGACGGC 137156 || ||| ||||||||| ||||||||| | ||| |||| | ||| |||| | || || Sbjct 1052 ACGCGGCCCATCATCACTTCGCGGTTGG-CGGCGGCGAACTTCTGCGCCCAACCCACAGC 994 Query 137157 TTCCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAG 137216 | |||||||||| || | | || | || || || | || ||||| || || | Sbjct 993 CTTCACGTAGTCGCCAAAGTACTGCGCACCCTCCTCGAAGTACGCCAGGTCTTTATCGGG 934 Query 137217 CGGCTTGCGCCCGTCACGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG-GC 137275 | | |||||| || | | | || || | ||||||| ||||||||| ||| | || Sbjct 933 CAGGTTGCGCTGGTT-CATCTCGGCGTCTTT--CTTGGCCAGCTCGATGAA-ATGGGTGC 878 Query 137276 CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCT 137335 |||||| ||| || || |||||||| || ||||| ||||||||||| |||| ||||| || Sbjct 877 CGATGGCGTTCCCCACCCCGCGCGAACCGGAGTGCAGCATCACCCACACGCTCTGGTGCT 818 Query 137336 CGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGC 137395 |||| ||||||| ||||||||||||||| || ||||| || ||||| || | Sbjct 817 CGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCCCAGCGTTCCCAGGTGCTTGTAGT 758 Query 137396 TGTTGGCGTTCTTCA-GCGCCGGGTACTTCTCGCAGAGCTTGTCGAAC 137442 |||| | |||||| | ||| ||||| | |||||| | | |||||| Sbjct 757 TGTTCGTGTTCTTGATGCG-CGGGTGCGCCTCGCAAATTTCCTCGAAC 711 >seq20256 Length=637 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 136648 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136707 ||||||||||| | || |||||||| |||| || | ||||| ||||||| || ||| Sbjct 517 CCCTTCACGCAAACCACCTGCTTGAGCGTGTAAACCACCTCCACCAGGTCCTGTTGCGCC 576 Query 136708 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 136767 |||| |||||||||||||| ||||| |||||||| || || || |||||| | || ||| Sbjct 577 GCCATCACCGCGTCGATGTCTTTGTACGCCATCGGAATCTCATCAATCACGTCCGCATCC 636 Query 136768 T 136768 | Sbjct 637 T 637 >seq15917 Length=696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 49789 CATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTC 49847 |||||||||||||||||| | ||||||||||| ||||||||| ||||||||| ||||| Sbjct 481 CATCGGGGTGTAGCTCAGCTTGGTAGAGCGCTACGTTCGGGACGTAGAGGCCGTAGGTTC 540 Query 49848 GAGTCCCGCCACCCAGACCA 49867 || ||| ||||| ||||| Sbjct 541 GAATCCTATCACCCCGACCA 560 >seq9315 Length=809 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 49786 GATCATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGG 49844 |||| |||||||||||||||| | ||||||||||| ||||||||| ||||| || || Sbjct 673 GATCTTCGGGGTGTAGCTCAGCTTGGTAGAGCGCTTCGTTCGGGACGAAGAGGTCGCAGG 614 Query 49845 TTCGAGTCCCGCCACCCAGACCA 49867 ||| ||||| | ||||| ||||| Sbjct 613 TTCAAGTCCTGTCACCCCGACCA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689796805807200