Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq39402 161 2e-34 seq2563 95.1 2e-14 seq20944 87.8 3e-12 seq23860 86.0 1e-11 seq12128 86.0 1e-11 seq14173 84.2 4e-11 >seq39402 Length=1059 Score = 161 bits (178), Expect = 2e-34 Identities = 490/745 (66%), Gaps = 43/745 (6%) Strand=Plus/Minus Query 168716 GAGCACGCGGACCATCATCATGTCGCGGTTCA-GGCGCGCGAAGTCTTGCGCCCAGCCCA 168774 || ||||||| ||||||||| |||||||| |||| ||||| | |||||||| |||| Sbjct 1056 GATCACGCGGCCCATCATCACTTCGCGGTTGGCGGCG-GCGAACTTCTGCGCCCAACCCA 998 Query 168775 CGGCTTCGATGTAGTCGTCGAAATCCTGCTCGCCCACTTCGAGCCACGCGAGGTTCTCGT 168834 | || | | ||||||| | || | |||| | ||| | |||| |||| |||| | | Sbjct 997 CAGCCTTCACGTAGTCGCCAAAGTACTGCGCACCCTCCTCGAAGTACGCCAGGTCTTTAT 938 Query 168835 CCTGCGGGC-GCACATGGCGCTTTGCCAGGGCGTTCTTCGCCTTCTCGATGAAGTAGTTG 168893 | || || || | ||| | | | | | ||||| ||| ||||||||| | | || Sbjct 937 CGGGCAGGTTGCGC-TGGTTCATCTCGGCGTCTTTCTTGGCCAGCTCGATGAAATGGGTG 879 Query 168894 CCGATCACGTTGCCGACGCCGCGCGATCCCGAGTGCAGCATCACCCACACGTTCGGGTCC 168953 ||||| |||| || || |||||||| || ||||||||||||||||||||| || ||| | Sbjct 878 CCGATGGCGTTCCCCACCCCGCGCGAACCGGAGTGCAGCATCACCCACACGCTCTGGTGC 819 Query 168954 GTCGTCCCCTGATCGGTCTGGATGCAGATTTCGATGAAGTGGTTGCCGCCACCCAGCGAC 169013 |||||| | |||||| |||||||||||||| || ||||||| Sbjct 818 -TCGTCC--------------AGGCAGATCTCGATGAAGTGGTTACCCGTTCCCAGCGTT 774 Query 169014 CCGAGTTGGGTCACGTTGTTCGACGTCTCCAAGATCGGATGCTTTTCGCACAGCTTCTTG 169073 || || || | |||||||| ||| | | ||| ||| ||||| | | || | Sbjct 773 CCCAGGTGCTTGTAGTTGTTCGTGTTCTTGATGCGCGGGTGCGCCTCGCAAATTTCCTCG 714 Query 169074 AACCGCGCCTCCAGCCCAGAATCGATCCAGGCACGCATGATAGAGTTCGGGATGCCATGA 169133 ||| || ||||||| | |||||| || | | |||| | || | Sbjct 713 AACTCGTCCACCAGCCCGGC------CCAGGCGCGGTCGGTC----TCGGCAGGCGGCGT 664 Query 169134 CGACCCGGTTCC--TGCCACGAACCCTTCGCGCCCGGCCCGCCGTGC-----GGAACCGC 169186 || | |||| || | || || |||| || | | | | | || || || Sbjct 663 ATCCCAGCTTCCCTTGTCGCGG--CCAAAGCGCTTGGGC-GTCATCCCCACGGGCACGGC 607 Query 169187 ACGTTCGATCGCCGAACGCATCGCCGC-CAAGTTGTCCGGCAGTTGCGAAGCAGTCAGCG 169245 |||||||| || | |||| ||||| || ||| || ||||| | || || |||| Sbjct 606 GCGTTCGATGGCGGCGCGCA-CGCCGGACAGGTTTTCGGGCAGATCACTGGCGGTGAGCG 548 Query 169246 TGGTGC-GCACAGCCATCATGCCGCAGCCGATGTCGACGCCGACCGCGTACGGGATCACC 169304 |||| |||| |||||||| ||||| || | ||| || || ||||| ||||| | Sbjct 547 TGGTCTTGCAC-GCCATCATTCCGCACCCCAGGTCCACCCCCACCGCAGCAGGGATGATG 489 Query 169305 GCATCCTTGGTCGGGATCACCGAACCAACGGCTGCGCCGTACCCGGCGTGGACGTCGGGC 169364 || | ||| || | |||||| || | || ||||| ||| ||| || |||||| Sbjct 488 GCCTTGAGGGTGGGTACCACCGAGCCGATGGTGGCGCCAATCCCCAGGTGCACATCGGGC 429 Query 169365 ATCACCGCGACGTGCTTGAACACGAACGGCAGCCCGGCGACGTTGTGGGCCTGATCTTCG 169424 |||||||| ||||| ||||| |||| ||||| | || | |||| | ||| | | | Sbjct 428 ATCACCGCCACGTGTTTGAAAACGATGGGCAGGCGTGCAATGTTGCGCAGCTGGTTCTTG 369 Query 169425 GCGCCGCGCTCGAAAGGCACACCGT 169449 ||| | ||| | |||||| |||| Sbjct 368 GCGTCTTCCTCCACAGGCACGCCGT 344 >seq2563 Length=982 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018 ||| |||||||||||||| |||||||||||| ||||||||||| ||||||| ||||| Sbjct 560 TGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTC 501 Query 133019 AAATCCCTCCCCCGCATCCA 133038 |||||| |||||||| ||| Sbjct 500 AAATCCTACCCCCGCAACCA 481 >seq20944 Length=626 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 426 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 485 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 486 CCTGCCCCCGCAACCA 501 >seq23860 Length=589 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 |||| ||| ||||||||||| | |||||||||| ||||||||||| ||||||| ||| Sbjct 195 TTTGTTGCAGGGTGGAGCAGCCTGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTTGGT 254 Query 133017 TCAAATCCCTCCCCCGCATCCA 133038 |||||||| |||| ||| ||| Sbjct 255 TCAAATCCAACCCCTGCACCCA 276 >seq12128 Length=757 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 534 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCCTAGGTTCAAAT 475 Query 133023 CCCTCCCCCGCATCCAC 133039 || ||||||| |||| Sbjct 474 CCTAGCCCCGCAACCAC 458 >seq14173 Length=720 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 132958 TTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTT 133017 ||| ||| ||||||||||| | |||||||||| ||||||||||| ||||||| |||| Sbjct 205 TTGTTGCAGGGTGGAGCAGCCTGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTTGGTT 146 Query 133018 CAAATCCCTCCCCCGCATCCA 133038 ||||||| |||| ||| ||| Sbjct 145 CAAATCCAACCCCTGCACCCA 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895315762318320