Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq39402 145 1e-29 seq20256 105 9e-18 seq15917 87.8 3e-12 seq9315 84.2 3e-11 >seq39402 Length=1059 Score = 145 bits (160), Expect = 1e-29 Identities = 247/348 (71%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 135858 ACCCGGACCATCATCATCTCGCGGTTGATCCGCG-CGAAGTCCTGGCCCCAGGCGACGGC 135916 || ||| ||||||||| ||||||||| | ||| |||| | ||| |||| | || || Sbjct 1052 ACGCGGCCCATCATCACTTCGCGGTTGG-CGGCGGCGAACTTCTGCGCCCAACCCACAGC 994 Query 135917 TTCCACGTAGTCGTGGAACTCCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAG 135976 | |||||||||| || | | | | || || || | || ||||| || || | Sbjct 993 CTTCACGTAGTCGCCAAAGTACTGCGCACCCTCCTCGAAGTACGCCAGGTCTTTATCGGG 934 Query 135977 CGGCTTGCGCCCGTCACGCCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACG-GC 136035 | | |||||| || | | | || || | ||||||| ||||||||| || | || Sbjct 933 CAGGTTGCGCTGGTT-CATCTCGGCGTCTTT--CTTGGCCAGCTCGATGAA-ATGGGTGC 878 Query 136036 CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCT 136095 |||||| ||| || || |||||||| || ||||| ||||||||||| |||| ||||| || Sbjct 877 CGATGGCGTTCCCCACCCCGCGCGAACCGGAGTGCAGCATCACCCACACGCTCTGGTGCT 818 Query 136096 CGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGC 136155 |||| ||||||| ||||||||||||||| || ||||| || ||||| || | Sbjct 817 CGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCCCAGCGTTCCCAGGTGCTTGTAGT 758 Query 136156 TGTTGGCGTTCTTCA-GCGCCGGGTACTTCTCGCAGAGCTTGTCGAAC 136202 |||| | |||||| | ||| ||||| | |||||| | | |||||| Sbjct 757 TGTTCGTGTTCTTGATGCG-CGGGTGCGCCTCGCAAATTTCCTCGAAC 711 >seq20256 Length=637 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||||||||| | || |||||||| |||| || | ||||| ||||||| || ||| Sbjct 517 CCCTTCACGCAAACCACCTGCTTGAGCGTGTAAACCACCTCCACCAGGTCCTGTTGCGCC 576 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 |||| |||||||||||||| ||||| |||||||| || || || |||||| | || ||| Sbjct 577 GCCATCACCGCGTCGATGTCTTTGTACGCCATCGGAATCTCATCAATCACGTCCGCATCC 636 Query 135528 T 135528 | Sbjct 637 T 637 >seq15917 Length=696 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 48501 CATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTC 48559 |||||||||||||||||| | ||||||||||| ||||||||| ||||||||| ||||| Sbjct 481 CATCGGGGTGTAGCTCAGCTTGGTAGAGCGCTACGTTCGGGACGTAGAGGCCGTAGGTTC 540 Query 48560 GAGTCCCGCCACCCAGACCA 48579 || ||| ||||| ||||| Sbjct 541 GAATCCTATCACCCCGACCA 560 >seq9315 Length=809 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 48498 GATCATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGG 48556 |||| |||||||||||||||| | ||||||||||| ||||||||| ||||| || || Sbjct 673 GATCTTCGGGGTGTAGCTCAGCTTGGTAGAGCGCTTCGTTCGGGACGAAGAGGTCGCAGG 614 Query 48557 TTCGAGTCCCGCCACCCAGACCA 48579 ||| ||||| | ||||| ||||| Sbjct 613 TTCAAGTCCTGTCACCCCGACCA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700092423732240