Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq39402 179 5e-40 seq15917 87.8 3e-12 seq9315 84.2 3e-11 >seq39402 Length=1059 Score = 179 bits (198), Expect = 5e-40 Identities = 446/657 (68%), Gaps = 35/657 (5%) Strand=Plus/Minus Query 139833 ACCCGGATCATCATCATCTCGCGGTTGATCCGCG-CGAAGTCCTGACCCCAGGCGACGGC 139891 || ||| |||||||| ||||||||| | ||| |||| | ||| |||| | || || Sbjct 1052 ACGCGGCCCATCATCACTTCGCGGTTGG-CGGCGGCGAACTTCTGCGCCCAACCCACAGC 994 Query 139892 TTCCACGTAGTCGTAGAATTCCGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAG 139951 | |||||||||| || | | || | || ||| | |||| ||||| || ||| | Sbjct 993 CTTCACGTAGTCGCCAAAGTACTGCGCACCCTCCTCGAAGTACGCCAGGTCTTTATCGGG 934 Query 139952 CGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACG-GC 140010 | | || | || | | | || || | ||||||| ||||||||| || | || Sbjct 933 CAGGTTGCGCTGGTTCAT-CTCGGCGTCTTT--CTTGGCCAGCTCGATGAA-ATGGGTGC 878 Query 140011 CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCT 140070 |||||| ||| || || |||||||| || ||||| ||||||||||| |||| ||||| || Sbjct 877 CGATGGCGTTCCCCACCCCGCGCGAACCGGAGTGCAGCATCACCCACACGCTCTGGTGCT 818 Query 140071 CGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACGC 140130 |||| ||||||| ||||||||||||||| || |||||||| ||||| || | | Sbjct 817 CGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCCCAGCGTTCCCAGGTGCTTGTAGT 758 Query 140131 TGTTGGCGTTCTTGAGGGTCTTGTACTTGTCGCAGAGCTTCTCGAACCGGGCTTCCAGGC 140190 |||| | |||||||| | | || | ||||| | | ||||||| | | |||| | Sbjct 757 TGTTCGTGTTCTTGATGCGCGGGTGCGCCTCGCAAATTTCCTCGAACTCGTCCACCAGCC 698 Query 140191 CCGAGTCGACCCACTTGCGCATGATCGAGTTCGGGATGCCGC-TACGCCCG-TTCC--AG 140246 || |||| |||| | ||| |||| | || || || || | |||| | Sbjct 697 ------CGGCCCA--GGCGC--GGTCGGTCTCGGCAGGCGGCGTATCCCAGCTTCCCTTG 648 Query 140247 CCGC--CCGACGGACCCG---GCCCGCCGTGCGGG-ACGGCGTGCTCGATCAGCGAGCGC 140300 ||| || | | | | | | || |||| |||||| | ||||| | |||| Sbjct 647 TCGCGGCCAAAGCGCTTGGGCGTCATCCCCACGGGCACGGCGCGTTCGATGGCGGCGCGC 588 Query 140301 AGCTTGGCGAGGCTGTCGGGCAGGTCCGAGGCCTTCAGCGAGGT-GCGCACGGCCATCAT 140359 | || ||| | |||||||| || ||| | |||| ||| |||| |||||||| Sbjct 587 ACGCCGGACAGGTTTTCGGGCAGATCACTGGCGGTGAGCGTGGTCTTGCAC-GCCATCAT 529 Query 140360 GCCGCAGCCGATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTT---GGTCGGGAT 140416 ||||| || | |||||| ||||| || || |||||||||| |||| ||| || | Sbjct 528 TCCGCACCCCAGGTCCACCCCCACCGCAGCAGGGATGATGG---CCTTGAGGGTGGGTAC 472 Query 140417 CACCGAGCCCACGGTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCCACATG 140473 ||||||||| | ||| | ||| || |||| ||| || || ||||||| ||||| || Sbjct 471 CACCGAGCCGATGGTGGCGCCAATCCCCAGGTGCACATCGGGCATCACCGCCACGTG 415 >seq15917 Length=696 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 49994 CATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTC 50052 |||||||||||||||||| | ||||||||||| ||||||||| ||||||||| ||||| Sbjct 481 CATCGGGGTGTAGCTCAGCTTGGTAGAGCGCTACGTTCGGGACGTAGAGGCCGTAGGTTC 540 Query 50053 GAGTCCCGCCACCCAGACCA 50072 || ||| ||||| ||||| Sbjct 541 GAATCCTATCACCCCGACCA 560 >seq9315 Length=809 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 49991 GATCATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGG 50049 |||| |||||||||||||||| | ||||||||||| ||||||||| ||||| || || Sbjct 673 GATCTTCGGGGTGTAGCTCAGCTTGGTAGAGCGCTTCGTTCGGGACGAAGAGGTCGCAGG 614 Query 50050 TTCGAGTCCCGCCACCCAGACCA 50072 ||| ||||| | ||||| ||||| Sbjct 613 TTCAAGTCCTGTCACCCCGACCA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715415910988800