Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq39402 149 9e-31 seq15917 87.8 3e-12 seq9315 84.2 3e-11 >seq39402 Length=1059 Score = 149 bits (164), Expect = 9e-31 Identities = 248/348 (71%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 136421 ACCCGGACCATCATCATCTCGCGGTTGATCCGCG-CGAAGTCCTGGCCCCAGGCGACGGC 136479 || ||| ||||||||| ||||||||| | ||| |||| | ||| |||| | || || Sbjct 1052 ACGCGGCCCATCATCACTTCGCGGTTGG-CGGCGGCGAACTTCTGCGCCCAACCCACAGC 994 Query 136480 TTCCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAG 136539 | |||||||||| || | | || | || || || | || ||||| || || | Sbjct 993 CTTCACGTAGTCGCCAAAGTACTGCGCACCCTCCTCGAAGTACGCCAGGTCTTTATCGGG 934 Query 136540 CGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG-GC 136598 | | || ||| || | | | || || | ||||||| ||||||||| ||| | || Sbjct 933 CAGGTTGCGCTGGTT-CATCTCGGCGTCTTT--CTTGGCCAGCTCGATGAA-ATGGGTGC 878 Query 136599 CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCT 136658 |||||| ||| || || |||||||| || ||||| ||||||||||| |||| ||||| || Sbjct 877 CGATGGCGTTCCCCACCCCGCGCGAACCGGAGTGCAGCATCACCCACACGCTCTGGTGCT 818 Query 136659 CGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGC 136718 |||| ||||||| ||||||||||||||| || ||||| || ||||| || | Sbjct 817 CGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCCCAGCGTTCCCAGGTGCTTGTAGT 758 Query 136719 TGTTGGCGTTCTTCA-GCGCCGGGTACTTCTCGCAGAGCTTGTCGAAC 136765 |||| | |||||| | ||| ||||| | |||||| | | |||||| Sbjct 757 TGTTCGTGTTCTTGATGCG-CGGGTGCGCCTCGCAAATTTCCTCGAAC 711 >seq15917 Length=696 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 48464 CATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGGTTC 48522 |||||||||||||||||| | ||||||||||| ||||||||| ||||||||| ||||| Sbjct 481 CATCGGGGTGTAGCTCAGCTTGGTAGAGCGCTACGTTCGGGACGTAGAGGCCGTAGGTTC 540 Query 48523 GAGTCCCGCCACCCAGACCA 48542 || ||| ||||| ||||| Sbjct 541 GAATCCTATCACCCCGACCA 560 >seq9315 Length=809 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 48461 GATCATCGGGGTGTAGCTCAG-TCGGTAGAGCGCTCGGTTCGGGACCGAGAGGCCGTGGG 48519 |||| |||||||||||||||| | ||||||||||| ||||||||| ||||| || || Sbjct 673 GATCTTCGGGGTGTAGCTCAGCTTGGTAGAGCGCTTCGTTCGGGACGAAGAGGTCGCAGG 614 Query 48520 TTCGAGTCCCGCCACCCAGACCA 48542 ||| ||||| | ||||| ||||| Sbjct 613 TTCAAGTCCTGTCACCCCGACCA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701010361708160