Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019525.1 Length=45354 Score E Sequences producing significant alignments: (Bits) Value seq35853 98.7 3e-16 >seq35853 Length=1422 Score = 98.7 bits (108), Expect = 3e-16 Identities = 250/377 (66%), Gaps = 10/377 (3%) Strand=Plus/Plus Query 28422 ATGGAGAATTTCATGCTTCCTACAGTCGAAGAATTCAAGGCATATTTCACGCGAGACTTT 28481 |||| || | ||| | || || |||| || ||||| || || || ||||| |||||| Sbjct 800 ATGGCGACGTACATACAACCGACCGTCGCGGATTTCAAAGCGTACTTTACGCGTGACTTT 859 Query 28482 CCTTACAATGATGACCCAGAAGTCGGTGTCACGGATACAGACATTCAAAAGGCAATGAAT 28541 || ||||| | ||||| | | || ||||| || | || || ||||| | Sbjct 860 CCGTACAACGCCGACCCGAACCTTGGCGTCACCGACGCCGATATCACCAAGGCGTTCGGG 919 Query 28542 GAAGCCGAGATGATGTTCAACGAAGGTCTGTTCAGCTCGCAGCAAGAAATCAACATCATG 28601 || | | || | ||||| ||| ||||| | ||| || ||| ||| | Sbjct 920 CAAACGAACATAAATATCAACCCCGGTTTGTTCGCCGATCAGGCGCAATACAATATCGGG 979 Query 28602 TTCTTTCTTCTGACGGCTCATTACCTTGTGATGGACTTGCGAATGGCCGCTCAGGGTATC 28661 | | | | || ||||||||||||| || | || ||||||||||| ||| ||||| Sbjct 980 TACCTCTTGCTCGCGGCTCATTACCTCGTCGTCGATTTGCGAATGGCGAGTCAAGGTATT 1039 Query 28662 AATGGCTCTTATTC---TTGGATCACAACAAGCAAATCTGTCGGCTCTGTTTCTGAATCC 28718 || || | | || |||| || ||| ||||| || || ||||| ||||| |||| Sbjct 1040 AACGG---TCAATCGAATTGGCTCGAAACGAGCAAGTCGGTTGGCTCGGTTTCCCAATCG 1096 Query 28719 TTCCAGGTTCCGACCATGGTGGCA--GACAATCCGATTCTTGCAGCTCTTTCGAAAACGA 28776 ||| ||||||| || | || ||||| ||| | | || || ||||||||||||| Sbjct 1097 TTCTCGGTTCCG--CAACGAATCATGGACAACCCGTATTTGGCGGCGCTTTCGAAAACGA 1154 Query 28777 ATTACGGCGGAAAGTAC 28793 ||||||||| || ||| Sbjct 1155 ATTACGGCGCCAAATAC 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144941896066032