Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq30224 149 1e-30 seq28604 102 1e-16 seq8215 102 1e-16 seq8306 98.7 2e-15 seq33130 91.5 2e-13 seq21895 91.5 2e-13 seq96 91.5 2e-13 seq145 87.8 3e-12 seq10590 86.0 1e-11 >seq30224 Length=530 Score = 149 bits (164), Expect = 1e-30 Identities = 186/252 (74%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 122413 AAAAGCA-GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGC---- 122467 ||||||| ||||| || ||||| || || |||||| | |||||| || | |||| Sbjct 184 AAAAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACA 243 Query 122468 -TTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCAT 122526 |||| || ||| || ||||||||| |||||||||| ||| | |||| || || Sbjct 244 ATTTGGCC-GCA----GGATTCCCGCTGCTCACGACCAAGAAGCTATCCCTCAAATCGAT 298 Query 122527 CATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAA 122586 ||| || || || || |||||||| | |||||||||||||||| ||||||| || ||| | Sbjct 299 CATTCACGAACTGCTCTGGTTCCTGAGGGGCGATACCAACATCAAGTATCTCAAGGACCA 358 Query 122587 CAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGG 122646 | |||| |||||||| || ||||| ||||| |||| | ||||| ||||| || || Sbjct 359 CGGCGTCTCGATCTGGGACGAGTGGGCGGATGAGAATGGCGACCTCGGTCCGGTCTATGG 418 Query 122647 TAAGCAATGGCG 122658 | || ||||| Sbjct 419 TTCTCAGTGGCG 430 >seq28604 Length=545 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 276 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 334 Query 169792 GTCAGTCCTGCCATTT 169807 |||| || |||| || Sbjct 335 GTCACTCGCGCCACTT 350 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 416 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 474 Query 169792 GTCAGTCCTGCCATTT 169807 |||| || |||| || Sbjct 475 GTCACTCGCGCCACTT 490 >seq8215 Length=829 Score = 102 bits (112), Expect = 1e-16 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 738 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 796 Query 169792 GTCAGTCCTGCCATTTTT 169809 |||| || |||||| || Sbjct 797 GTCACTCGCGCCATTCTT 814 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 612 TGTAGCTCAGTCGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 670 Query 169792 GTCAGTCCTGCCA 169804 |||| || |||| Sbjct 671 GTCACTCGCGCCA 683 >seq8306 Length=821 Score = 98.7 bits (108), Expect = 2e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 545 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 487 Query 169792 GTCAGTCCTGCCAT 169805 |||| || ||||| Sbjct 486 GTCACTCGCGCCAT 473 >seq33130 Length=504 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 167023 CTAGGGGCATAGCTCAGCTGGCAGAGCACCGGTCTCCAAAACCGGGTGTCCAAGGTTCGA 167082 ||||||| ||||||||| ||| |||||| ||||||||||||||| | ||| |||||||| Sbjct 266 CTAGGGGTATAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGTAGGTTCGA 207 Query 167083 ATCCTTGTGCCCCTGCCA 167100 |||| ||||||||||| Sbjct 206 GTCCTACTGCCCCTGCCA 189 >seq21895 Length=617 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||| |||| Sbjct 509 GTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCG 451 Query 169793 TCAGTCCTGCCATTTTT 169809 || || |||| |||| Sbjct 450 TCTCTCGCGCCACTTTT 434 >seq96 Length=52461754 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||||||||||| Sbjct 26528566 GGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG 26528508 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 26528507 CCCCGTCAGTCC 26528496 >seq145 Length=44152522 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 169727 AGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGA 169786 |||||||||| ||| ||||| ||||| ||| ||||||| || ||| || |||||||||| Sbjct 42513992 AGGATTGTAGTTCAATTGGT-TAGAGCACCGTCCTGTCAAGGTGGAAGTTGCGGGTTCGA 42514050 Query 169787 GCCCCGTCAGTCCTG 169801 ||||||||||||||| Sbjct 42514051 GCCCCGTCAGTCCTG 42514065 >seq10590 Length=786 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| | |||||||| |||||| |||||||||||||| Sbjct 716 GGATTGTAGTTCAATTGGT-TAGAGCATCTCCCTGTCAAGGCGGAAGTCGCGGGTTCGAG 774 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 775 CCCCGTCAGTCC 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777240792781600