Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq146 114 1e-20 seq1 84.2 2e-11 seq57 82.4 6e-11 >seq146 Length=1334862 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || ||||| |||| || |||||||| ||| ||| |||| |||| Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | | || ||| ||| |||||||| ||| | || |||||| Sbjct 1119928 CGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 1119987 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || || || || || ||||||||||||||| | |||| | || ||||| || Sbjct 1119988 ACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACAA 1120047 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||| |||||||| || || ||| |||| |||| Sbjct 1120048 CATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAG 1120083 >seq1 Length=34941034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || | || || || ||||| ||| || ||| ||| Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| | || || ||||| | || ||| || Sbjct 3649624 GACACTATTGACAATGTTAAGACAAAAATTACTGATAAGGAGGGTATCCCACCAGACCAG 3649683 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||||||||| || || |||||||||||| | ||| | || ||||| ||| Sbjct 3649684 CAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACAAC 3649743 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || || || || ||| |||| Sbjct 3649744 ATCCAAAAGGAGTCCACCCTCCACTTGGT 3649772 >seq57 Length=33024243 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| |||||||||||||||| ||| ||| ||| | Sbjct 18658462 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 18658403 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || | || ||| ||| |||||||| || | || ||| Sbjct 18658402 CTCCGACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAGA 18658343 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | || || || || || |||||| | |||||| | || | || ||||| Sbjct 18658342 CCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATTA 18658283 Query 28730 TAACATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || ||||| || ||||| ||| Sbjct 18658282 CAACATCCAGAAAGAGTCGACTCTTCAC 18658255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425196139743234