Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq26327 311 3e-80 seq190 224 3e-54 seq96 212 2e-50 seq20795 158 4e-34 seq295 132 1e-26 seq50 113 1e-20 seq1964 98.7 3e-16 seq252 86.0 2e-12 seq126 84.2 7e-12 seq223 80.6 8e-11 >seq26327 Length=568 Score = 311 bits (344), Expect = 3e-80 Identities = 404/553 (73%), Gaps = 4/553 (1%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| |||| | || |||||||| || || ||||| | ||| || || Sbjct 18 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 77 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 |||||||||||||| ||||| || || |||||||| | ||| || ||||||||||| Sbjct 78 GGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 137 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATAC 18397 || || ||||||||||||||||| || || ||||| |||| || || | | ||||| || Sbjct 138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-AC 196 Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTA 18456 | || || | ||||| || || || ||||| |||||| |||||| ||||||||||| | Sbjct 197 AGCAGTAGCC-GCTGCAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCA 255 Query 18457 GTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGA 18516 | | ||||||||||||| | || ||||| ||| || | || | | ||||| | Sbjct 256 GACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTA 315 Query 18517 ACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCC 18576 ||||| || | ||| || || || || ||||||||||| || | | ||| ||||||| Sbjct 316 GAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCC 375 Query 18577 AGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGA 18636 | ||||| || ||||| | || || || ||| | || | || || || || || | Sbjct 376 ATATTGGATAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAA 435 Query 18637 TGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGG 18696 | |||||||| || |||| | ||| || ||||| || ||||||||||| || || || | Sbjct 436 TATTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTCGCGAATACCATCAATATCTACTG 495 Query 18697 GAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCA 18756 |||||||||||| || || || | |||| | | || ||| || || | | |||||||| Sbjct 496 GAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCA 555 Query 18757 TAAGTACCCCAAA 18769 | | || ||||| Sbjct 556 TCAAAACACCAAA 568 >seq190 Length=503529 Score = 224 bits (248), Expect = 3e-54 Identities = 376/539 (70%), Gaps = 5/539 (1%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| ||||||||||||||||||| || ||||||||||| | || Sbjct 35168 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACC 35227 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCT-A 17946 ||||||||| | ||| | | | |||| | ||| | ||| | || | || | | Sbjct 35228 AAGGTTAGCACGGTTAATGATATAAGCCTAGGTATTAATGACACGACCAAGA-CTATTAA 35286 Query 17947 CAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAG 18006 | | ||||||||||| ||||| ||||| || || | ||||||||| || || | || Sbjct 35287 CTACAGATTGGTTGAAATTGAAACCATTTAGGTTGATAGCCATAGTACTAATACCTAAAG 35346 Query 18007 AGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTAT 18066 |||| | || | | |||||||| || ||||| || |||| | | || Sbjct 35347 CAGTAAACTGAATACCTACTATAGGCCAAGCCGCTAAGAATAAGTGTAAAGAACGAGAAT 35406 Query 18067 TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATAT 18126 |||| || |||||||| |||||||||| || | ||| || |||||||| || || ||| Sbjct 35407 TGTTGAAACTAGCATATTGGAAGATGAATCGACGAAAATAACCATGAGCGGCTACGATA- 35465 Query 18127 TATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCG 18186 |||| | ||||| ||||| || ||| | || || | || ||| ||| | || | Sbjct 35466 TATAATTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTGG 35525 Query 18187 TTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 ||||||| || | ||||| || | || ||||||||| |||| | || | Sbjct 35526 TTTCTCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGC 35585 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 |||| || || || ||||| | ||| || || || |||| |||||| || || || || | Sbjct 35586 CGAAAACACCAGCTACACCTAACATGTGAAATGGGTGCACAAGGATGTTATGCTCAGCCT 35645 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAA 18365 ||||||| | ||| || |||||| ||| | || | | ||||||||||||||||| ||| Sbjct 35646 GGAATACAATCATAAAGTTGAAAATAC--CAAAGAACTAGAGGCATACCATCAGAAAAA 35702 >seq96 Length=52461754 Score = 212 bits (234), Expect = 2e-50 Identities = 310/433 (72%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATAC 18397 || || ||||||||||||||||| || || ||||| ||| || || | | ||||| || Sbjct 25271040 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGAGCAATTGGGTAGATCAAGAAA-AC 25270982 Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTA 18456 | || || | ||| | || || || ||||| |||||| |||||| |||| |||||| | Sbjct 25270981 AGCAGTAGCC-GCTACAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCA 25270923 Query 18457 GTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGA 18516 | | ||||||||||||| | || ||||| |||| || | || | | ||||| | Sbjct 25270922 GACGGAAACTAAGTTCCCACTCACGACCCATATAAGAAGCTACACCAAGTAAGAAGTGTA 25270863 Query 18517 ACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCC 18576 ||||| || | ||| || || || || ||||||||||| || | | ||| ||||||| Sbjct 25270862 GAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCC 25270803 Query 18577 AGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGA 18636 | ||||| || ||||| | ||||| || ||| | || | || || || || || | Sbjct 25270802 ATATTGGATAAAAGTGCAACCCGATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAA 25270743 Query 18637 TGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGG 18696 | |||||||| || |||| | ||| || ||||| | |||||||||| || || || | Sbjct 25270742 TATTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTTGCGAATACCATTAATATCTACTG 25270683 Query 18697 GAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCA 18756 |||||||||||| || || || | |||| | | || ||| || || | | |||||||| Sbjct 25270682 GAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCA 25270623 Query 18757 TAAGTACCCCAAA 18769 | | || ||||| Sbjct 25270622 TCAAAACACCAAA 25270610 Score = 111 bits (122), Expect = 5e-20 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| |||| | || |||||||| || | ||||| | ||| || || Sbjct 4492538 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAACTACACCTAACATGTGAAAT 4492479 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || ||||||||||| ||||| || || || ||||| | ||| || ||||||||||| Sbjct 4492478 GGGTGCATAAGGATGTTGTGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAG 4492419 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA----AAGGATA-AACGAGAA 18393 || || | ||||||||||||| | || || ||||| |||| || || | | |||| Sbjct 4492418 ATTCCTAAAGGCATACCATCAAAAAAGCTTCCTTGACCAATTGGCCGGGTAGATCAAGAA 4492359 Query 18394 ATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGC 18447 | || | || | || | | | || || || ||||| |||||| |||||| |||| Sbjct 4492358 A-ACAGCAGTA-GCCGTTACAACCGGAGCTGAATATGCAACAGCAATCCAAGGGC 4492306 >seq20795 Length=630 Score = 158 bits (174), Expect = 4e-34 Identities = 261/373 (70%), Gaps = 9/373 (2%) Strand=Plus/Minus Query 17953 ATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAA 18012 |||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 545 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTATTAATACCTAAAGCAGTAA 486 Query 18013 GCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAA---TGTAGACTCCTGCTATTGT 18069 ||| || || || |||||||| | |||||||| |||| | | ||||| Sbjct 485 ACCAAATACATACTACAAGCCAAGCAACTAAGAAGAATAAGTGTAAAGAACGAGAATTGT 426 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || |||||||| |||||||| | || ||||| || |||||||| || || ||||||| Sbjct 425 TGAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACGATATTAT 366 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||| ||||| || ||| | || || | || ||| ||| | || |||| Sbjct 365 AAGTTTCTTCCTCTTGACCGAATATGTAACCTTCATTAGCAGATTCATTTTATGTGGTTT 306 Query 18190 CTCTAATAAGTGAGGAAGTAAC-AAG--ACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 || || | ||||| || ||| ||| || |||||| | || | | | | Sbjct 305 TCCTGATCAAACTAGAAGTTACCAAGGAACTA---TGTATAGCACCAAACAGGGAGTCGC 249 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 ||||||| || | ||||| | ||| || ||||| ||||||||||| ||||| || || | Sbjct 248 CGAATACACCAACTACACCTAACATGTGAAACGGGTGCATAAGGATGTTGTGCTCAGCCT 189 Query 18307 GGAATACGAACAT 18319 |||||| || ||| Sbjct 188 GGAATATGATCAT 176 >seq295 Length=224868 Score = 132 bits (146), Expect = 1e-26 Identities = 242/348 (70%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| | | ||||| | ||| || || || || |||||||| |||| | ||||| Sbjct 182855 GAATACACTAGTTACACCTAACATGTGAAATGGGTGGATAAGGATGTTGTACTTAGCTTG 182796 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || |||||||||| || | | | ||||| ||| ||| ||||| Sbjct 182795 GAATACAATCATAAAGTTGAAAGTACAAGAGATTCTTATAAGCATATCATTAGAAAAACT 182736 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| |||| || |||| | ||||| || | || | || ||||| || || | ||| Sbjct 182735 TCCTTGACCAATTGGGTAAATCAAGAAA-ACAGCAGTA-GCCGCTGCAACCGGAGGTGAA 182678 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| ||||| ||| ||| | ||||| || ||| | || ||| Sbjct 182677 TATGCAACAGCAATCCAAGGGCGATTACTTAGACAGACACTAAATTTCCACTCACGGCCC 182618 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 || ||| | | || | | ||||| | ||||| || | ||| || || | || Sbjct 182617 ATATAACAAGTTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCAGCATTG 182558 Query 18546 TATAACCACTCGTC-GAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 18592 ||||||||||| || | | ||| |||||||| |||| || ||||| Sbjct 182557 TATAACCACTCATCATATCGATGCTGCTTCCCATATTGAATAAAAGTG 182510 >seq50 Length=1444883 Score = 113 bits (124), Expect = 1e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 18550 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 18609 ||||||| || | | ||| |||||||| ||||| || ||||| | || || || || Sbjct 509291 ACCACTCATCAACCGATGCCGCTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAG 509232 Query 18610 ATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAG 18669 | | || | || || || || || || |||||||| || |||| | ||| || |||| Sbjct 509231 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAG 509172 Query 18670 GCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTG 18729 | || ||||||||||| || || || ||||||||||||| || || || | |||| | | Sbjct 509171 GTTCGCGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAG 509112 Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAA 18769 | ||| || || | | ||||||||| | || ||||| Sbjct 509111 AATTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAA 509072 >seq1964 Length=2038 Score = 98.7 bits (108), Expect = 3e-16 Identities = 180/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| |||||||| |||| | |||||| || |||||||| ||| Sbjct 801 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAATGAGAATTGTTTAAACTAGCATATTGG 742 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||| | || ||||||| ||| || ||||| ||||| Sbjct 741 AAGATCAATCGACCAAAATAACCATGAACGGCTACAATATCATAAGTTTCTTCCTCTTGA 682 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206 || ||| | || || | || ||| ||| || || ||||| || || | ||| Sbjct 681 CCGAATCTGTAACCTTCATTAGCAGATTCATCTTCTGTGGTTTCCCTGATCAAACTAGAA 622 Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATA--AAGCTCCACCGAATACCCCTGCAACAC 18264 || || | || | |||| || |||| ||| || |||||||| || | |||| Sbjct 621 GTTACCAAGGAACCATACATAACACTAAATAGGAAG--CCGCCGAATACACCATCTACAC 564 Query 18265 CGAGCATATGGAACGGATGCAT 18286 | | ||| || || || | ||| Sbjct 563 CTAACATGTGAAATGGGTTCAT 542 >seq252 Length=353890 Score = 86.0 bits (94), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 |||| ||| || || || |||| | ||| || || | ||||||||||| ||||| || Sbjct 38867 CCACTGAA-ACACCAGCTGCACCTAACATGTGAAATTGGTGCATAAGGATGTTGTGCTCA 38925 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 || | |||||| | ||| || ||||||||||| || || |||||||||||||||| Sbjct 38926 GCCTAGAATACAATCATAAAGTTGAAAGTACCAAAGATTCCTAGAGGCATACCATCAGTA 38985 Query 18363 AAACTCCCTTGTCCAA 18378 |||| |||| |||| Sbjct 38986 TAACTTTCTTG-CCAA 39000 >seq126 Length=369524 Score = 84.2 bits (92), Expect = 7e-12 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 17946 ACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATA 18005 || || ||||||||||| ||||| ||||| ||||| ||||||||||| || || | | Sbjct 171277 ACTATAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTACTAATACCTAAA 171218 Query 18006 GAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA 18065 | || ||| || | || || |||||||| |||||||| |||| | | | Sbjct 171217 GCAAAAAACCAAATACCTACTACAGGTCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 171158 Query 18066 TTGTTAAAGCTAGCATACTGGAAGAT 18091 ||||| || |||||||| |||||||| Sbjct 171157 TTGTTGAAACTAGCATATTGGAAGAT 171132 >seq223 Length=728060 Score = 80.6 bits (88), Expect = 8e-11 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 18222 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 18281 ||||||||| ||||| || | ||||| || || | || | ||| || | || Sbjct 691268 TGCATAGCACTAAATAAGAAGCCGTCAAATACACCAGCTATTCCTAACATGTGAAGTGGG 691327 Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 ||||||||||| ||||| || || |||||||| | ||| || || ||| | || || Sbjct 691328 TGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTAAAAATTCCAGAGATT 691387 Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA 18378 || ||| |||||||||||| || || ||||| |||| Sbjct 691388 CCTTGAGACATACCATCAGAAAAGCTTCCTTGACCAA 691424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151246081721124