Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq127 123 3e-23 seq187 120 4e-22 seq1 100 3e-16 seq18 84.2 3e-11 >seq127 Length=60962716 Score = 123 bits (136), Expect = 3e-23 Identities = 365/556 (66%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 64664 TGAAGTATCCACAACTCTGGGAACTCTATAAAAAGGCTCAAATGAGCAATT-GGACTGCG 64722 |||| || |||||| |||||||| | || ||||| || | || | | || |||| || Sbjct 5747499 TGAA-TACCCACAAATCTGGGAAATGTACAAAAAAGC-CGAAGCATCGTTTTGGACGGCT 5747442 Query 64723 GAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGAAAATGAAAAG 64782 |||||||| ||| | || ||| | | ||||| | ||||| | | | || || Sbjct 5747441 GAAGAAGTCGATCTATCATCCGATTTAGGTCACTGGGAAACCCTAACTTCCGACGAGAAA 5747382 Query 64783 AAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAAT 64842 | ||||| | || | || || ||||| || | || |||||||| || | || ||| Sbjct 5747381 CATTTCATTACACACGTTCTCGCCTTCTTCGCCGCATCAGATGGAATCGTGCTGGAAAAT 5747322 Query 64843 ATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCTACGCATAT 64902 || ||| | | || ||||| | ||||||||| |||| |||| | | Sbjct 5747321 CTCGCAGGTCGGTTTATGAAAGAGGTGCAAGTCGCTGAAGCGCGCGCATTTTACGGTTTT 5747262 Query 64903 CAAT--GCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATTGACAAATACA 64960 ||| ||||| ||||| ||||| |||| || ||| | | || | |||| Sbjct 5747261 CAAATCGCCAT--TGAAAACATTCATTCTGAAATGTACTCACTCCTTTTAGAAACTTACA 5747204 Query 64961 TTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTG 65020 |||||||| ||| |||| || | ||| ||| ||| |||| || || ||| | Sbjct 5747203 TTAAGGATTCATCCCAAAAATCTCACCTCTTTCGAGCAATCGAAACCGTGCCCTGTGTGA 5747144 Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGC 65080 | |||||||| | |||||| ||| ||| |||| |||| || || || ||| Sbjct 5747143 AAAAGAAGGCTGATTGGGCACTGAGGTGGATTGA---TGGGTCTGAATCATTTGCAGAGA 5747087 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | | |||||||||| ||| | || || || |||||||| || |||||| | |||| Sbjct 5747086 GGATAATTGCGTTTGCTTGTATTGAAGGGATATTCTTCTCAGGAAGTTTCTGCTCCATTT 5747027 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 |||| | |||||||| || || ||||| || || || || |||||| | || || | Sbjct 5747026 TTTGGCTTAAGAAGCGTGGGCTAATGCCGGGTTTAACGTTTTCGAATGAATTGATCTCTC 5746967 Query 65201 GAGATGAGGGTCTCCA 65216 |||| || || || || Sbjct 5746966 GAGACGAAGGACTTCA 5746951 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAACGGC 75188 |||| ||| | || |||||||||| ||||||||||||||| || | ||||| | | || Sbjct 7120759 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGA-GATCATATCTCTTGAAGGT 7120701 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 || || | | |||| | ||||| ||||| | ||| |||| || |||| |||| Sbjct 7120700 GAGA-GGAAAAGTTGTGGAGAGACCACAACACATGCTGATGAGGGTTGCTGTCGGGATCC 7120642 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTC 75307 | ||| || || || || | | | || ||| || ||||| || |||| |||| Sbjct 7120641 ATAAGGATGATATCGAGTCGGCTATCAAAACCTACCACTTCATGTCTCAGAGGTG-GTTC 7120583 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | || || | |||||||||||||||||||| |||||||| || || Sbjct 7120582 ACACATGCTTCTCCAACCCTCTTCAATGCTGGCACACCAAGGCCCCA 7120536 >seq187 Length=45274173 Score = 120 bits (132), Expect = 4e-22 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || ||||||||||| || || || || || || ||| | ||| ||||| Sbjct 20418188 CCAGGGACTGGAAAGACCCTGCTGGCTAAGGCTATTGCTGGGGAAGCTGGTGTTCCATTT 20418129 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | || | ||||| || ||||||||||||||||| || | | | Sbjct 20418128 TTCTCCATT--TCCGGGTCAGAATTTGTTGAAATGTTTGTTGGTGTGGGAGCTTCACGAG 20418071 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || || || || | | || |||||| || |||||||| || | ||||| | Sbjct 20418070 TGCGTGACCTTTTCAAGAAAGCAAAGGAAAATGCTCCTTGTATTGTGTTTGTGGATGAAA 20418011 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||||| ||||| | |||| | | |||| | | || ||||| || || |||| Sbjct 20418010 TTGATGCAGTGGGGAGGCAAAGGGGTACTGGGATTGGGGGAGGCAATGATGAAAGGGAAC 20417951 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 | ||| | || || || || || ||||||||||||||||| | | ||||| || | | Sbjct 20417950 AGACACTGAACCAGCTTCTGACTGAGATGGATGGCTTTGAGGGTAATACTGGTATAATTG 20417891 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || |||| || ||||| || | || || ||||| Sbjct 20417890 TTGTTGCTGCAACTAACCGAGCAGACATTCTTGA 20417857 >seq1 Length=34941034 Score = 100 bits (110), Expect = 3e-16 Identities = 221/327 (68%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 175324 GGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC--CAGT 175381 ||||||||||| || || || || || || ||| | ||| ||||| || || | Sbjct 27640586 GGAAAGACCCTGCTGGCTAAGGCTATTGCTGGGGAAGCTGGTGTTCCATTTTTCTCCATT 27640645 Query 175382 GCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATC 175441 || | || | ||||| || |||||||||||||||| || | | || || || | Sbjct 27640646 --TCCGGGTCAGAATTTGTTGAAATGTTTGTTGGTGTGGA-GCTTCACGAGTGCGTGACC 27640702 Query 175442 TCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGG 175501 | || | | || |||||| || |||||||| || | | |||||| ||||| | Sbjct 27640703 TTTTCAAGAAAGCAAAGGAAAATGCTCCTTGTATTGTGTTTGTGGTTGAGATCGATGCAG 27640762 Query 175502 TGGGCAAGCAACGCAGCG--CTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAAT 175559 |||| | |||| | | | |||| | | || ||||| || || ||||| ||| | Sbjct 27640763 TGGGGAGGCAAAGGGGGGTACTGGGATTGGGGGAGGCAATGATGAAAGGGAACAGACACT 27640822 Query 175560 TAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGC 175619 ||||| || || || ||||||||||||||||| | | ||||| || | ||| |||| Sbjct 27640823 GAATCAGCTTCTGACTGAGATGGATGGCTTTGAGGGTAATACTGGTATAATTGTTGTTGC 27640882 Query 175620 GGCCACTAATCGCGTGGATATCCTTGA 175646 || ||||| || | || || ||||| Sbjct 27640883 TGCAACTAACCGGGCAGACATTCTTGA 27640909 >seq18 Length=621311 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 14/202 (7%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| |||||||||| ||||| || ||||| | ||| | ||||| | || Sbjct 599305 TTTGTGGAGCTGTTTGTTGGGGTGGGAGCTTCTAGGGTGAGGGATTTGTTTGAGAAGGCA 599246 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | | || || || || ||||| || ||||||||||||||||| || || | ||| | Sbjct 599245 AAGAGCAAGGCA-CCTTGCATTGTGTTTATTGATGAGATTGATGCTGTTGGGAGACAAAG 599187 Query 175515 -----CAGCGCTGG-TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568 ||| | ||| |||| | |||||| ||||| ||||| || || ||||| | Sbjct 599186 AGGAGCAGGGATGGGTGGT------GGAAATGATGAGAGGGAACAGACTATCAATCAGTT 599133 Query 175569 ACTCACCGAGATGGATGGCTTT 175590 | || ||||||||||| ||| Sbjct 599132 GTTGACTGAGATGGATGGGTTT 599111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596269480748480