Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq26327 315 9e-81 seq190 277 2e-69 seq96 183 4e-41 seq50 127 3e-24 seq295 107 2e-18 seq223 105 8e-18 seq22 93.3 5e-14 seq252 87.8 2e-12 seq57 86.0 8e-12 seq20795 84.2 3e-11 >seq26327 Length=568 Score = 315 bits (348), Expect = 9e-81 Identities = 410/567 (72%), Gaps = 0/567 (0%) Strand=Plus/Plus Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318 ||| || || || ||||| ||||||||||| || || || || ||||| | ||| ||||| Sbjct 2 AGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTAC 61 Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378 ||| ||| || || ||||||||||| ||||| ||||| || |||||||| | ||| || Sbjct 62 ACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAA 121 Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 ||| || |||||||| || ||||||||||| |||||||| || || ||||||| ||| Sbjct 122 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGG 181 Query 8439 ATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCA 8498 || | ||||| || || ||| || | || ||||| |||||| ||| ||||| Sbjct 182 GTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACAGCAATCCA 241 Query 8499 TGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCC 8558 || | |||||| | ||| | | ||||||| | |||||| ||| || | || Sbjct 242 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACC 301 Query 8559 AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAA 8618 || | |||||| | | || | || ||| ||||| || || || ||||||||||| | Sbjct 302 AAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAAC 361 Query 8619 TGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGAC 8678 | || |||||||| || ||||| ||||| || |||||||| |||| |||| | Sbjct 362 CGATGCCGCTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAATAAT 421 Query 8679 AGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACC 8738 |||||||| || || |||||||| || | | || || | ||||||||| |||||||| Sbjct 422 GGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTCGCGAATACC 481 Query 8739 GTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAA 8798 || ||||| || || ||||||||||| || || | ||||| || || |||| || Sbjct 482 ATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAA 541 Query 8799 CAAGCAAGGAATCATTAGAACTCCAAA 8825 ||| ||| ||||| | ||| ||||| Sbjct 542 TAAGGTAGGGATCATCAAAACACCAAA 568 >seq190 Length=503529 Score = 277 bits (306), Expect = 2e-69 Identities = 383/531 (72%), Gaps = 5/531 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 35175 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 35234 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | | | || | ||| ||||| |||| | || ||| || ||| Sbjct 35235 GCACGGTTAATGATATAAGCCTAGGTATTAATGACACGACCAAGACTATTAACTACAGAT 35294 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| | ||||| || | |||||| | || ||| ||| Sbjct 35295 TGGTTGAAATTGAAACCATTTAGGTTGATAGCCATAGTACTAATACCTAAAGCAGTAAAC 35354 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || || ||| | || | | || | ||| ||||| | | | | ||||| ||| Sbjct 35355 TGAATACCTACTATAGGCCAAGCCGCTAAGAATAAGTGTAAAGAACGAGAATTGTTGAAA 35414 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| || ||| || |||||||| || || ||| |||| | Sbjct 35415 CTA-GCATATTGGAAGATGAATCGACGAAAATAACCATGAGCGGCTACGATA-TATAATT 35472 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | || ||| || | || || || ||||| Sbjct 35473 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCTCT 35532 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| ||||||||||| || || || || ||||| | Sbjct 35533 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAAAC 35592 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || || |||| ||| ||||||||||| || |||||||| Sbjct 35593 ACCAGCTACACCTAACATGTGAAATGGGTGCACAAGGATGTTATGCTCAGCCTGGAATAC 35652 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 | ||| ||||| || |||| ||| | |||||||||| |||||||| || Sbjct 35653 AATCATAAAGTTGAAAATACC--AAAGAACTAGAGGCATACCATCAGAAAA 35701 >seq96 Length=52461754 Score = 183 bits (202), Expect = 4e-41 Identities = 299/431 (69%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 8395 ATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACT 8454 || ||||||||||| |||||||| || || ||| ||| ||| || | ||||| || Sbjct 25271040 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGAGCAATTGGGTAGATCAAGAAAACA 25270981 Query 8455 GCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAG 8514 || ||| || || ||||| |||||| ||| ||||| || | |||||| | Sbjct 25270980 GCAGTAGCCGCTACAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGA 25270921 Query 8515 CGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAG 8574 ||| | | ||||||| | |||||| |||| || | |||| | |||||| | Sbjct 25270920 CGGAAACTAAGTTCCCACTCACGACCCATATAAGAAGCTACACCAAGTAAGAAGTGTAGA 25270861 Query 8575 ATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAA 8634 | || | || ||| ||||| || || || ||||||||||| | | || |||||||| Sbjct 25270860 ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 25270801 Query 8635 ATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATG 8694 || ||||| ||||| || || ||||| |||| |||| | |||||||| || || Sbjct 25270800 ATTGGATAAAAGTGCAACCCGATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATA 25270741 Query 8695 TTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGT 8754 |||||||| || | | || || | |||||||| |||||||| | ||||| || || Sbjct 25270740 TTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTTGCGAATACCATTAATATCTACTGGA 25270681 Query 8755 GGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATT 8814 ||||||||||| || || | ||||| || || |||| || ||| ||| ||||| Sbjct 25270680 GGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATC 25270621 Query 8815 AGAACTCCAAA 8825 | ||| ||||| Sbjct 25270620 AAAACACCAAA 25270610 Score = 131 bits (144), Expect = 2e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318 ||| || || || ||||| ||||||||||| || || || || ||||| | ||| |||| Sbjct 4492554 AGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAACTAC 4492495 Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378 ||| ||| || || || |||||||| ||||| ||||| || || ||||| | ||| || Sbjct 4492494 ACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGAAATACAATCATAAA 4492435 Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 ||| || |||||||| || |||| |||||| |||||| | || || ||||||| ||| Sbjct 4492434 GTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAAAAGCTTCCTTGACCAATTGG 4492375 >seq50 Length=1444883 Score = 127 bits (140), Expect = 3e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 |||||||||| | | || |||||||| || ||||| ||||| || |||||||| | Sbjct 509291 ACCACTCATCAACCGATGCCGCTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAG 509232 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 ||| |||| | |||||||| || || |||||||| || | | || || | ||||| Sbjct 509231 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAG 509172 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 |||| |||||||| || ||||| || || ||||||||||| || || | ||||| || Sbjct 509171 GTTCGCGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAG 509112 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 | |||| || ||| ||| ||||| | ||| ||||| Sbjct 509111 AATTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAA 509072 >seq295 Length=224868 Score = 107 bits (118), Expect = 2e-18 Identities = 231/343 (67%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 8316 TACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACAT 8375 ||| ||| ||| || || || || ||||| ||||| | || ||||||||||| | ||| Sbjct 182843 TACACCTAACATGTGAAATGGGTGGATAAGGATGTTGTACTTAGCTTGGAATACAATCAT 182784 Query 8376 GAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAA 8435 ||||| || |||| ||| || | || | |||| ||| ||| || || ||||||| Sbjct 182783 AAAGTTGAAAGTACAAGAGATTCTTATAAGCATATCATTAGAAAAACTTCCTTGACCAAT 182724 Query 8436 TGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGAT 8495 ||| || | ||||| || || ||| || | || |||| |||||| ||| || Sbjct 182723 TGGGTAAATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGGTGAATATGCAACAGCAAT 182664 Query 8496 CCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAAT 8555 ||| || | ||| || | | || | ||||| | ||||| ||| || | Sbjct 182663 CCAAGGGCGATTACTTAGACAGACACTAAATTTCCACTCACGGCCCATATAACAAGTTAC 182604 Query 8556 TCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATC 8615 |||| | |||||| | | || | || ||| ||||| | || || ||||||||||| Sbjct 182603 ACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCAGCATTGTATAACCACTCATC 182544 Query 8616 -TAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || | || |||||||| || | ||| |||||||| ||||| Sbjct 182543 ATATCGATGCTGCTTCCCATATTGAATAAAAGTGTAA-CCAAT 182502 >seq223 Length=728060 Score = 105 bits (116), Expect = 8e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 8245 TCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCG 8304 || ||||| | | ||| || ||||| ||| ||||||||||| || | | || | Sbjct 691235 TCCCTGATCAAACTAGAAGTTACTAAGAAACTATGCATAGCACTAAATAAGAAGCCGTCA 691294 Query 8305 AACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGG 8364 || | ||| |||| ||| ||| || | || |||||||| ||||| ||||| || ||| Sbjct 691295 AATACACCAGCTATTCCTAACATGTGAAGTGGGTGCATAAGGATGTTGTGCTCAGCCTGG 691354 Query 8365 AATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAA 8424 ||||| | ||| |||||||| | ||||| || ||| ||| ||| |||||||| || Sbjct 691355 AATACAATCATAAAGTTAAAAATTCCAGAGATTCCTTGAGACATACCATCAGAAAAGCTT 691414 Query 8425 CCCTGACCAAATG 8437 || ||||||| || Sbjct 691415 CCTTGACCAATTG 691427 >seq22 Length=40393389 Score = 93.3 bits (102), Expect = 5e-14 Identities = 227/334 (68%), Gaps = 15/334 (4%) Strand=Plus/Minus Query 7896 GTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAA-GTTTGCTC 7954 ||||| |||||||| || |||| | || |||| |||||||||||| || ||| || | Sbjct 6368534 GTCTAGGGGGAAGTTATGAACATTACGATCGTGCACAACTTCCATACCAAAGGTTCGCAC 6368475 Query 7955 TGTT--TAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATT 8011 ||| |||| | ||| ||| ||| ||| | ||| | | |||||| || |||| Sbjct 6368474 GGTTGATAATAATATCAGGCCAGGTATTAATTAAACGACCTTGACTATCAACTACAGATT 6368415 Query 8012 GGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACC 8071 |||| || || || || | || || || | || || | |||||| | || || ||| Sbjct 6368414 GGTTGAAATTGAAACCATCTAGATTGAAGGATATAGTACTAATACCTAAAGCGGTAAACT 6368355 Query 8072 AAACACATAC----AACTGGGAATGTAGCGAGGAAGAAGTG--AAGACTTCTACTGTTGT 8125 ||| || ||| || || | | | | | ||||||||| |||| | || |||| Sbjct 6368354 AAATACCTACTACATACAGGTCAAGCAACTAAGAAGAAGTGTAAAGAATCATA--ATTGT 6368297 Query 8126 TAAACG-AT-GCATACTGGAAGATTAA-TCTACCAAAGTATCCATGAGCAGCAACAATAT 8182 | || | || || || |||||||| || || |||||| || |||| || | || |||| Sbjct 6368296 TGAAGGTATAGCTTATTGGAAGATCAATTCGACCAAAATAAGCATGTGCGACTACGATAT 6368237 Query 8183 TATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 |||| || || |||||| | || || ||||| Sbjct 6368236 TATAAGTTATTTGCTCTTGATCGAATTTGTAACC 6368203 >seq252 Length=353890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 |||| ||| | ||| ||| | ||| ||| || || | |||||||| ||||| ||||| Sbjct 38867 CCACTGAA-ACACCAGCTGCACCTAACATGTGAAATTGGTGCATAAGGATGTTGTGCTCA 38925 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAG 8416 || | |||||| | ||| ||||| || |||||| | || ||||||||||| ||||||| Sbjct 38926 GCCTAGAATACAATCATAAAGTTGAAAGTACCAAAGATTCCTAGAGGCATACCATCAG 38983 >seq57 Length=33024243 Score = 86.0 bits (94), Expect = 8e-12 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 8052 AATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAG 8111 |||||| | || ||| ||||||| | ||| | || | | ||| | ||||||||| | Sbjct 2481771 AATACCTAAAGCAGTAAACCAAATGCCTACTAAAGGCGAAGCAGCTAAGAAGAAGTGTAA 2481712 Query 8112 ACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAG 8170 | | | ||||| |||| | ||||| |||||||| |||| | ||| || ||||||| Sbjct 2481711 AGAACGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCGAAAATAACCATGAG 2481653 Query 8171 CAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 || || | |||||| || ||||| ||||||||||| | ||||| Sbjct 2481652 TGGCTACGAAATTATAAGTTTCTTCCTCTTGACCAAATATGTAACC 2481607 >seq20795 Length=630 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 7912 TGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCC 7971 || ||||| | ||||||||||||||||||||| | ||| | | | | | | ||| || Sbjct 174 TGAGCATTACGTTCATGCATAACTTCCATACCAATGTTATCCCGGATAATGATATCAGCC 115 Query 7972 CATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTA 8031 || | | ||||| ||| | | | |||| || |||||||||| || || || || Sbjct 114 CAGGCATTAATGACACGACCTTGACTACCAACTACAAATTGGTTAAAATTGAAACCATTT 55 Query 8032 AGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACAC 8077 ||||| || ||||| | | |||||| | || ||| ||||||| || Sbjct 54 AGGTTGAAAGCCATAATACTAATACCTAAAGTAGTAAACCAAATAC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615552575023120