Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq26327 262 1e-65 seq190 217 4e-52 seq96 159 1e-34 seq20795 123 7e-24 seq295 105 2e-18 seq170 91.5 4e-14 seq223 87.8 5e-13 seq50 87.8 5e-13 >seq26327 Length=568 Score = 262 bits (290), Expect = 1e-65 Identities = 373/522 (71%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| || ||||||||| || || | || ||||| || ||||| ||| Sbjct 3 GAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACA 62 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||| ||||| || || || || || || |||||||| | ||||||| Sbjct 63 CCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAG 122 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || |||||||||||||| || |||||||| |||||| ||| || ||||| || | || Sbjct 123 TTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 182 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | ||||| || || ||| || | | || |||| |||||||||| ||||| Sbjct 183 TAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACAGCAATCCAA 242 Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCT 26545 || | ||| || || | | || |||||||||| | || ||| ||||| || Sbjct 243 GGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCA 302 Query 26546 ATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGT 26605 | ||||||||| | | ||| || | ||| || || |||||||||| |||||| || | Sbjct 303 AGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACC 362 Query 26606 G-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGAC 26664 | |||| |||||||| || || ||||| || | || || || ||| | || | | Sbjct 363 GATGCC-GCTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAATAAT 421 Query 26665 TGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCC 26724 || || || || |||||||||||||| | || || |||||||| || || || || || Sbjct 422 GGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTCGCGAATACC 481 Query 26725 ATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 ||| |||||||| || || || || |||||||| | ||||| Sbjct 482 ATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAA 523 >seq190 Length=503529 Score = 217 bits (240), Expect = 4e-52 Identities = 368/531 (69%), Gaps = 3/531 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || |||||||||||||||| || ||||||||||| | || |||||| Sbjct 35175 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 35234 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | || |||| | ||| || | ||| | || ||||| || Sbjct 35235 GCACGGTTAATGATATAAGCCTAGGTATTAATGACACGACCAAGACTATTAACTACAGAT 35294 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| | ||||| || | ||||| | || || | | Sbjct 35295 TGGTTGAAATTGAAACCATTTAGGTTGATAGCCATAGTACTAATACCTAAAGCAGTAAAC 35354 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || | ||||||| || | || || || | |||||| || || ||| Sbjct 35355 TGAATACCTACTATAGGCCAAGCCGCTAAGAATAAGTGTAAAGAACGAGAATTGTTGAAA 35414 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| | ||| || || || || || || ||| |||| | Sbjct 35415 CTAGCATATTGGAAGATGAATCGACGAAAATAACCATGAGCGGCTACGATA-TATAATTT 35473 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | | ||| |||||| Sbjct 35474 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCTCTG 35533 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| || || | || |||||||| Sbjct 35534 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAAACA 35593 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || |||||||||| || || ||||| || || |||||||| Sbjct 35594 CCAGCTACACCTAACATGTGAAATGGGTGCACAAGGATGTTATGCTCAGCCTGGAATACA 35653 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAA 26407 | ||||||||| ||| ||||| || | | |||||||| |||||| |||| Sbjct 35654 ATCATAAAGTTGAAAATACCAAAG--AACTAGAGGCATACCATCAGAAAAA 35702 >seq96 Length=52461754 Score = 159 bits (176), Expect = 1e-34 Identities = 269/387 (70%), Gaps = 2/387 (1%) Strand=Plus/Minus Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACT 26440 || || |||||||| |||||| ||| || ||||| | | || || | ||||| || Sbjct 25271040 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGAGCAATTGGGTAGATCAAGAAAACA 25270981 Query 26441 GCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGT 26500 || ||| || | || |||| |||||||||| ||||| || | ||| || || Sbjct 25270980 GCAGTAGCCGCTACAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGA 25270921 Query 26501 CTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAG 26560 | | || |||||||||| | || ||| | ||||| || | ||||||||| | Sbjct 25270920 CGGAAACTAAGTTCCCACTCACGACCCATATAAGAAGCTACACCAAGTAAGAAGTGTAGA 25270861 Query 26561 ATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCA 26619 | ||| || | ||| || || |||||||||| |||||| || | | |||| |||||||| Sbjct 25270860 ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC-GCTTCCCA 25270802 Query 26620 GATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTAT 26679 || || ||||| || | ||||| || ||| | || | | || || || || || Sbjct 25270801 TATTGGATAAAAGTGCAACCCGATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAAT 25270742 Query 26680 ATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGG 26739 |||||||||||| | || || |||||||| || | || || |||| |||||||| || Sbjct 25270741 ATTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTTGCGAATACCATTAATATCTACTGG 25270682 Query 26740 CGGTGCTGCGATGAAGGCAAGTATAAA 26766 || || || |||||||| | ||||| Sbjct 25270681 AGGAGCAGCAATGAAGGCTATAATAAA 25270655 Score = 118 bits (130), Expect = 3e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| || ||||||||| || || | || ||||| || ||| | ||| Sbjct 4492553 GAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAACTACA 4492494 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||||||||| || || || || || || || ||||| | ||||||| Sbjct 4492493 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGAAATACAATCATAAAG 4492434 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 || |||||||||||||| || | |||||| |||||| ||| || ||||| || Sbjct 4492433 TTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAAAAGCTTCCTTGACC 4492381 >seq20795 Length=630 Score = 123 bits (136), Expect = 7e-24 Identities = 266/392 (68%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 25977 CATTAAC-ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTG 26035 |||| || ||| ||| | | ||||| || || |||||||||||||| || ||||| || Sbjct 564 CATTGACTATCAACTGCAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTA 505 Query 26036 CAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGC-AAGA--AAGAAA 26092 ||||| | || || | ||| || | || || |||||| | | |||| || || Sbjct 504 TTAATACCTAAAGCAGTAAACCAAATACATACTACAAGCCAAGCAACTAAGAAGAATAAG 445 Query 26093 TGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCG 26152 || | |||||| || || ||||| ||||| || || || |||| ||||| || || Sbjct 444 TGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCA 385 Query 26153 TGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGT 26212 || || || || |||||||| || ||||| ||||| || || | || || | ||| Sbjct 384 TGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATATGTAACCTTCATTAGCA 325 Query 26213 GAGACTTCCTCTGTCGTTT--CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAG 26270 || | | | ||| |||| ||| || | ||||| ||||| | || |||| Sbjct 324 GATTCATTTTATGTGGTTTTCCTG--ATCAAACTAGAAGTTACCAAGGAACTATGTATAG 267 Query 26271 CAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGA 26330 || | || || | | ||||| || ||| | ||||| ||| || || |||||||| | Sbjct 266 CACCAAACAGGGAGTCGCCGAATACACCAACTACACCTAACATGTGAAACGGGTGCATAA 207 Query 26331 GTATATTATGTTCTGCTTGGAATACGAACATA 26362 | || || || || || ||||||| || |||| Sbjct 206 GGATGTTGTGCTCAGCCTGGAATATGATCATA 175 >seq295 Length=224868 Score = 105 bits (116), Expect = 2e-18 Identities = 233/348 (67%), Gaps = 1/348 (0%) Strand=Plus/Minus Query 26290 GAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTG 26349 ||| || | || ||||| ||| || |||||||| || || || || | | ||||| Sbjct 182855 GAATACACTAGTTACACCTAACATGTGAAATGGGTGGATAAGGATGTTGTACTTAGCTTG 182796 Query 26350 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACT 26409 |||||| | ||||||||| ||||||| |||||| | | | |||| ||| | |||||| Sbjct 182795 GAATACAATCATAAAGTTGAAAGTACAAGAGATTCTTATAAGCATATCATTAGAAAAACT 182736 Query 26410 CCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATA 26469 ||||| || | || |||| ||||| || || ||| || | | || | || ||| Sbjct 182735 TCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGGTGAATA 182676 Query 26470 TGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGC 26529 ||||||| ||||| || | | | ||| | | | | || ||||| | || Sbjct 182675 TGCAACAGCAATCCAAGGGCGATTACTTAGACAGACACTAAATTTCCACTCACGGCCCAT 182616 Query 26530 ATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTA 26589 ||| | ||| || | ||||||||| | | ||| || | ||| || || ||||||| Sbjct 182615 ATAACAAGTTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCAGCATTGTA 182556 Query 26590 TAGCCACTCGTC-CAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTA 26636 || |||||| || | | | |||||||| || | ||||| |||| Sbjct 182555 TAACCACTCATCATATCGATGCTGCTTCCCATATTGAATAAAAGTGTA 182508 >seq170 Length=38796167 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| ||||| || ||||| || || |||||||||||||| || ||||| || | ||||| Sbjct 2058080 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 2058021 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | ||| || || || || |||||||||| | ||||| || | |||||| Sbjct 2058020 TAAAGCAGTGAACCAAATACCTACTACAAGCCAAGTAGCTAAGAAGAAGTGTAAAGAACG 2057961 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATC 26138 | || ||||| ||||| || || || |||| Sbjct 2057960 AGAATCGTTGAAACTAGCATATTGGAAGATCAATC 2057926 Score = 89.7 bits (98), Expect = 2e-13 Identities = 117/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || |||||||||||||| | || ||||||||||| | || ||||| Sbjct 32379496 GCTAGGTCTAGAGGGAAGTTATGAGCATTGTGTTCATGCATAACTTCGACACCATGGTTA 32379437 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTA-TCTTTCCATTAAC-ATCTACTACTG 25994 || |||| | | |||| |||| ||| |||| | || || || ||| ||||| | Sbjct 32379436 GCATGGTTAATGATATCA-CCCAGGTATTAATTACACGATC--TTGACTATCAACTACAG 32379380 Query 25995 ACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCAT 26031 | ||||| || || |||||||||||||| || ||||| Sbjct 32379379 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCAT 32379343 >seq223 Length=728060 Score = 87.8 bits (96), Expect = 5e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 26311 CATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAA 26370 ||| || | ||||||||| || || || || || || |||||||| | |||||||||||| Sbjct 691315 CATGTGAAGTGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTAAA 691374 Query 26371 AGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 | | |||||||| || ||| ||| |||||| ||| || ||||| || Sbjct 691375 AATTCCAGAGATTCCTTGAGACATACCATCAGAAAAGCTTCCTTGACC 691422 >seq50 Length=1444883 Score = 87.8 bits (96), Expect = 5e-13 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 26593 CCACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651 |||||| || | | |||| |||||||| || || ||||| || | || || || || Sbjct 509290 CCACTCATCAACCGATGCC-GCTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAG 509232 Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711 | | || | | || || || || |||||||||||||| | || || |||||||| | Sbjct 509231 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAG 509172 Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 | || || || ||||| |||||||| || || || || |||||||| | ||||| Sbjct 509171 GTTCGCGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAA 509117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147641405296320