Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq26327 271 2e-68 seq190 210 6e-50 seq96 194 5e-45 seq20795 141 3e-29 seq22 104 7e-18 seq50 100 8e-17 seq223 91.5 4e-14 seq252 89.7 1e-13 >seq26327 Length=568 Score = 271 bits (300), Expect = 2e-68 Identities = 395/553 (71%), Gaps = 4/553 (1%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| ||| | | || || || || || || || || | ||| || ||| Sbjct 18 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 77 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 || ||||| || |||||||| || || ||||| |||| ||| |||||||| || ||| | Sbjct 78 GGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 137 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| ||||||||||||||| || || ||||| | ||| || | ||||| ||| Sbjct 138 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 197 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGT 41156 || ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 198 GCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 257 Query 41157 CTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAG 41216 | | | ||||||||||| | ||| || ||||| || | ||| ||||| | Sbjct 258 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 317 Query 41217 ACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCA 41275 ||||| || | ||| || || || ||||||| |||||| || | | |||| |||||||| Sbjct 318 ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC-GCTTCCCA 376 Query 41276 GATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAAT 41335 ||||| || || || | || || || ||| | |||| | || ||||| ||||| Sbjct 377 TATTGGATAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAAT 436 Query 41336 ATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGG 41395 |||||| ||||| | || || |||||||| || || || || ||||| |||||||| || Sbjct 437 ATTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTCGCGAATACCATCAATATCTACTGG 496 Query 41396 CGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCA 41454 || || || || ||||| || || || ||| | || ||||| | ||| | || |||| Sbjct 497 AGGAGCAGCAATGAAGGCTATAATAAATACA-GAAGTTGCAGTCAATAAGGTAGGGATCA 555 Query 41455 TTAGCACACCAAA 41467 | | |||||||| Sbjct 556 TCAAAACACCAAA 568 >seq190 Length=503529 Score = 210 bits (232), Expect = 6e-50 Identities = 369/535 (69%), Gaps = 3/535 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| |||| || ||||| ||||||||||| || Sbjct 35171 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAG 35230 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| | || |||| | ||| |||||| |||| | | ||||| Sbjct 35231 GTTAGCACGGTTAATGATATAAGCCTAGGTATTAATGACACGACCAAGACTATTAACTAC 35290 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| | |||||||||| ||||| | | || Sbjct 35291 AGATTGGTTGAAATTGAAACCATTTAGGTTGATAGCCATAGTACTAATACCTAAAGCAGT 35350 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || | || || | | || |||| | | || ||||||| | ||| |||||| Sbjct 35351 AAACTGAATACCTACTATAGGCCAAGCCGCTAAGAATAAGTGTAAAGAACGAGAATTGTT 35410 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || || ||| ||||| || || |||||||| |||| Sbjct 35411 GAAACTAGCATATTGGAAGATGAATCGACGAAAATAACCATGAGCGGCTACGAT-ATATA 35469 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 | | || | || ||||| || | || || | || |||||| ||| ||||| || Sbjct 35470 ATTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTC 35529 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 | || | ||||| || | | || ||||||||| ||| | | || || || Sbjct 35530 TCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 35589 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || || || || | ||| || |||||||||| || ||||| || || || ||||| Sbjct 35590 AACACCAGCTACACCTAACATGTGAAATGGGTGCACAAGGATGTTATGCTCAGCCTGGAA 35649 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 |||| ||| |||||||| | ||| || ||| ||||||||||||||| ||| Sbjct 35650 TACAATCATAAAGTTGAAAATACCAAAGA--ACTAGAGGCATACCATCAGAAAAA 35702 >seq96 Length=52461754 Score = 194 bits (214), Expect = 5e-45 Identities = 308/434 (71%), Gaps = 6/434 (1%) Strand=Plus/Minus Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| ||||||||||||||| || || ||| | | ||| || | ||||| ||| Sbjct 25271040 ATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGAGCAATTGGGTAGATCAAGAAAACA 25270981 Query 41097 GCTAGAGCTGCTGACAAT-GGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 || ||| ||| |||| ||||||| ||||| ||| ||||| || | |||||| || Sbjct 25270980 GCAGTAGCCGCT-ACAACCGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAG 25270922 Query 41156 TCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAA 41215 | | | ||||||||||| | ||| || | ||||| || | ||| ||||| | Sbjct 25270921 ACGGAAACTAAGTTCCCACTCACGACCCATATAAGAAGCTACACCAAGTAAGAAGTGTAG 25270862 Query 41216 GACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCC 41274 ||||| || | ||| || || || ||||||| |||||| || | | ||||| |||||| Sbjct 25270861 AACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCG-CTTCCC 25270803 Query 41275 AGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAA 41334 | ||||| || || || | ||||| || ||| | |||| | || ||||| |||| Sbjct 25270802 ATATTGGATAAAAGTGCAACCCGATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAA 25270743 Query 41335 TATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAG 41394 ||||||| ||||| | || || |||||||| || | || || |||| |||||||| | Sbjct 25270742 TATTGTTTCCGTAAAGTAGAGATCCGGAAACAGGTTTGCGAATACCATTAATATCTACTG 25270683 Query 41395 GCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATC 41453 | || || || || ||||| || || || ||| | || ||||| | ||| | || ||| Sbjct 25270682 GAGGAGCAGCAATGAAGGCTATAATAAATACA-GAAGTTGCAGTCAATAAGGTAGGGATC 25270624 Query 41454 ATTAGCACACCAAA 41467 || | |||||||| Sbjct 25270623 ATCAAAACACCAAA 25270610 Score = 113 bits (124), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| ||| | | || || || || || | || || | ||| || ||| Sbjct 4492538 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAACTACACCTAACATGTGAAAT 4492479 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||||||| || |||||||| || || || || |||| ||| |||||||| || ||| | Sbjct 4492478 GGGTGCATAAGGATGTTGTGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAG 4492419 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAAT----GGATAAACTAAGAA 41092 ||||||||||||||||||||| | || || ||||| | | || || | ||||| Sbjct 4492418 ATTCCTAAAGGCATACCATCAAAAAAGCTTCCTTGACCAATTGGCCGGGTAGATCAAGAA 4492359 Query 41093 TACAGCTAGAGCTGCTGACAA-TGGAGCTGTGTATGCCACAAATATCCATGG 41143 ||||| ||| | | |||| ||||||| ||||| ||| ||||| || Sbjct 4492358 AACAGCAGTAGCCG-TTACAACCGGAGCTGAATATGCAACAGCAATCCAAGG 4492308 >seq20795 Length=630 Score = 141 bits (156), Expect = 3e-29 Identities = 248/359 (69%), Gaps = 3/359 (1%) Strand=Plus/Minus Query 40653 TGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGC 40712 ||||| || || |||||||| ||||| |||||||||||| ||||| | | |||| | Sbjct 543 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTATTAATACCTAAAGCAGTAAAC 484 Query 40713 CATATGCCAATAACCGGGAAAGC-ACCAAGA--AAGAAGTGTAGCGCACGGCTATTGTTG 40769 || || | | || | |||| || |||| || ||||||| | ||| ||||||| Sbjct 483 CAAATACATACTACAAGCCAAGCAACTAAGAAGAATAAGTGTAAAGAACGAGAATTGTTG 424 Query 40770 AATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAA 40829 || ||||||||| || || | || |||||| ||||| || || |||||||| |||||| Sbjct 423 AAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCGGCTACGATATTATAA 364 Query 40830 GTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCC 40889 || || | || ||||| || | || || | || |||||| ||| ||||| | | Sbjct 363 GTTTCTTCCTCTTGACCGAATATGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTTC 304 Query 40890 CGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAG 40949 | || | ||||| || | | | || |||||| |||||| | | || || Sbjct 303 CTGATCAAACTAGAAGTTACCAAGGAACTATGTATAGCACCAAACAGGGAGTCGCCGAAT 244 Query 40950 ACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || | || || | ||| || || |||||||| || |||||||| || || ||||| Sbjct 243 ACACCAACTACACCTAACATGTGAAACGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 185 Score = 80.6 bits (88), Expect = 8e-11 Identities = 118/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 40554 TGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCC 40613 ||||| ||||| || ||||| ||||||||||| | | | | | ||| | ||||||| Sbjct 174 TGAGCATTACGTTCATGCATAACTTCCATACCAATGTTATCCCGGATAATGATATCAGCC 115 Query 40614 CAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTG 40673 || | | |||||| ||| | | | ||||| | |||||||| || |||||||| Sbjct 114 CAGGCATTAATGACACGACCTTGACTACCAACTACAAATTGGTTAAAATTGAAACCATTT 55 Query 40674 AGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCC 40720 ||||| ||||||||| || ||||| | | |||| ||| || || Sbjct 54 AGGTTGAAAGCCATAATACTAATACCTAAAGTAGTAAACCAAATACC 8 >seq22 Length=40393389 Score = 104 bits (114), Expect = 7e-18 Identities = 215/314 (68%), Gaps = 11/314 (4%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC-TA 40587 || |||| |||||| || ||||| ||| | ||||| ||||||| ||||||||||| | Sbjct 6368543 AGTAGCTTGGTCTAGGGGGAAGTTATGAACATTACGATCGTGCACAACTTCCATACCAAA 6368484 Query 40588 GACTC---TGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTA 40644 | || | || ||| || ||||| ||| ||| ||| | ||| | | || | Sbjct 6368483 GGTTCGCACGGTTGATAATAATATCAGGCCAGGTATTAATTAAACGACCTTGACTATCAA 6368424 Query 40645 CTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGG 40704 |||| || ||||| || || ||||||| || || || | |||||| ||||| | | Sbjct 6368423 CTACAGATTGGTTGAAATTGAAACCATCTAGATTGAAGGATATAGTACTAATACCTAAAG 6368364 Query 40705 AGGTAAGCCATATGCC-AATA---ACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGG 40760 ||||| | | || || | || || || ||||| | | |||||||||| | | Sbjct 6368363 CGGTAAACTAAATACCTACTACATACAGGTCAAGCAACTAAGAAGAAGTGTAAAGAATCA 6368304 Query 40761 CTATTGTTGAA--TGAAGCATATTGAAATAT-TAGTCTACCAAAGTAACCGTGTGCAGCT 40817 ||||||||| | ||| ||||| || || | || |||||| ||| | ||||| || Sbjct 6368303 TAATTGTTGAAGGTATAGCTTATTGGAAGATCAATTCGACCAAAATAAGCATGTGCGACT 6368244 Query 40818 ACGATGTTATAAGT 40831 ||||| |||||||| Sbjct 6368243 ACGATATTATAAGT 6368230 >seq50 Length=1444883 Score = 100 bits (110), Expect = 8e-17 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 41249 CCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 |||||| || | | ||||| ||||||| ||||| || || || | || || || || Sbjct 509290 CCACTCATCAACCGATGCCG-CTTCCCATATTGGATAAAAGTGCAACCCAATAGCTGCAG 509232 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | |||| | || ||||| ||||||||||| ||||| | || || |||||||| | Sbjct 509231 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCGGAAACAG 509172 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 | || || || ||||| |||||||| || || || || || ||||| || || || ||| Sbjct 509171 GTTCGCGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA- 509113 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAA 41467 | | ||||| | ||| | || ||||| | |||||||| Sbjct 509112 GAATTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAA 509072 >seq223 Length=728060 Score = 91.5 bits (100), Expect = 4e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40920 TGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGG 40979 ||||||||| ||| || || |||| || || || | || | ||| || | |||| Sbjct 691268 TGCATAGCACTAAATAAGAAGCCGTCAAATACACCAGCTATTCCTAACATGTGAAGTGGG 691327 Query 40980 TGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATT 41039 ||||| || |||||||| || || ||||| |||| ||| ||||| || ||||| |||| Sbjct 691328 TGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTAAAAATTCCAGAGATT 691387 Query 41040 CCTAAAGGCATACCATCAGAGAA 41062 ||| || |||||||||||| || Sbjct 691388 CCTTGAGACATACCATCAGAAAA 691410 >seq252 Length=353890 Score = 89.7 bits (98), Expect = 1e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||| || ||| ||||||| || |||||||| || || | ||| |||| ||| |||||||| Sbjct 38892 CATGTGAAATTGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATAAAGTTGAA 38951 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAG 41058 || ||| |||||||| |||||||||||||| Sbjct 38952 AGTACCAAAGATTCCTAGAGGCATACCATCAG 38983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143633721569364