Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq146 131 3e-25 seq58 127 4e-24 seq57 123 4e-23 seq157 107 3e-18 seq257 96.9 6e-15 seq145 96.9 6e-15 >seq146 Length=1334862 Score = 131 bits (144), Expect = 3e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || |||||||||||||| ||||| | | |||||||| || || ||| Sbjct 1120032 GTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATT 1119973 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||| ||||| || || ||||| | || || ||||||||||| || |||||| Sbjct 1119972 CCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACTTCT 1119913 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| ||||| || ||||| ||||| || || || |||||| Sbjct 1119912 AGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATT 1119868 >seq58 Length=2649046 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| || || || || ||||| | || | ||| || || || |||||| Sbjct 1146700 ATACCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCG 1146641 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| || || | ||||||||||||||| ||||| | |||||||| ||| Sbjct 1146640 GCGAGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGA 1146581 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || || | |||| || || || |||||| |||| Sbjct 1146580 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCA 1146521 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| || || |||||||| Sbjct 1146520 ACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| ||||| ||||| |||| ||| | |||| ||| || || || ||||| Sbjct 1147384 ATACCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCA 1147325 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | || || || || || || || ||||| ||||| || Sbjct 1147324 GCCAAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGG 1147265 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || ||||| | || | ||| |||||||||||| ||| Sbjct 1147264 GGAATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCC 1147205 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || ||||| || || || | || || ||||| || ||||| Sbjct 1147204 ACCTCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 >seq57 Length=33024243 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||||| ||||| || || || | || | |||||| || || || || | Sbjct 18658231 ACCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGC 18658290 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | |||||||||||| ||||| | | ||||| || || || Sbjct 18658291 AAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGG 18658350 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||| ||||| || || | ||| | ||| || || ||||| || || || Sbjct 18658351 AATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGGATTCGAC 18658410 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||| ||||| |||||||| ||||| ||||| || || || ||||| || Sbjct 18658411 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 18658461 >seq157 Length=426068 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| || | ||| | |||| ||| || ||||| Sbjct 398521 AATTTGCATACCACCACGAAGACGAAGGACTAAATGAAGGGTAGACTCCTTTTGGATATT 398462 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || | | ||| || | ||| || |||||||| || | |||||||| Sbjct 398461 GTAATCTGCCAAAGTACGACCATCCTCAAGTTGCTTACCGGCAAAGATGAGCCTCTGTTG 398402 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| || |||||||| || | || | ||| ||| ||||| || Sbjct 398401 ATCTGGTGGGATACCTTCCTTGTCTTGTATCTTAGCCTTCACATTGTCAATCGTATCAGA 398342 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||| || || || || || || || || ||||| |||||||| Sbjct 398341 GCTCTCAACCTCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || ||||| || ||||| | || | || || ||| ||||| || | Sbjct 398968 ACCACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGC 398909 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || || || || ||||||||||| | ||||| ||||| ||||| Sbjct 398908 GAGGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGG 398849 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || ||||| || ||||| | ||| ||||||||| || ||| || Sbjct 398848 GATCCCTTCCTTGTCCTGTATCTTTGTTTTCACATTATCAATAGTATCCGAGCTCTCCAC 398789 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || || || || || || ||||| Sbjct 398788 CTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 >seq257 Length=328955 Score = 96.9 bits (106), Expect = 6e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 193135 CACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATA 193194 |||| | || ||||| || ||||| | || | || || ||| ||||| |||| | Sbjct 268824 CACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCGGCAA 268765 Query 193195 ACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTA 193254 || | | ||| || || || || ||||||||||| | ||||| ||||| ||||| | Sbjct 268764 GGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGGA 268705 Query 193255 TTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTT 193314 | ||||| || || ||||| || ||||| | ||| ||||||||| || |||||| | Sbjct 268704 TCCCTTCCTTGTCCTGTATCTTTGTTTTAACATTATCAATAGTATCCGAGCTCTCAACCT 268645 Query 193315 CTAGAGTTATAGTTTT 193330 | ||||| || || || Sbjct 268644 CCAGAGTGATCGTCTT 268629 >seq145 Length=44152522 Score = 96.9 bits (106), Expect = 6e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 193135 CACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATA 193194 |||| | || ||||| || ||||| | || | || || ||| ||||| |||| | Sbjct 18651144 CACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCGGCAA 18651203 Query 193195 ACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTA 193254 || | | ||| || || || || ||||||||||| | ||||| ||||| ||||| | Sbjct 18651204 GGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGGA 18651263 Query 193255 TTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTT 193314 | ||||| || || ||||| || ||||| | ||| ||||||||| || |||||| | Sbjct 18651264 TCCCTTCCTTGTCCTGTATCTTTGTTTTAACATTATCAATAGTATCCGAGCTCTCAACCT 18651323 Query 193315 CTAGAGTTATAGTTTT 193330 | ||||| || || || Sbjct 18651324 CCAGAGTGATCGTCTT 18651339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899201806362720