Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq146 123 4e-23 seq157 118 2e-21 seq170 105 1e-17 seq58 102 1e-16 seq1 95.1 2e-14 seq57 87.8 3e-12 >seq146 Length=1334862 Score = 123 bits (136), Expect = 4e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | ||||||||||| || || ||||||| ||| ||| Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || |||||||||| || || ||||| |||||||| || || ||||| || Sbjct 1119928 CGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 1119987 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | |||||| ||||| || || | |||||| |||||| | ||||||| || Sbjct 1119988 ACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACAA 1120047 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| | |||||||| || ||| |||| Sbjct 1120048 CATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAG 1120083 >seq157 Length=426068 Score = 118 bits (130), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | |||||||| || ||||| || || || || ||| Sbjct 398285 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCT 398344 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||| |||||||| || ||||| || || ||||| ||| Sbjct 398345 GATACGATTGACAATGTGAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGATCAA 398404 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||||||||| || || ||| | ||||| ||||||| | Sbjct 398405 CAGAGGCTCATCTTTGCCGGTAAGCAACTTGAGGATGGTCGTACTTTGGCAGATTACA-- 398462 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 ||||||||| ||| | || ||||||||||| Sbjct 398463 ATATCCAAAAGGAGTCTACCCTTCATTTAGT 398493 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || |||||||| || || || || | || || || |||| Sbjct 397829 ATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACGATCACTCTCGAGGTGGAGAGTTCT 397888 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||| || || ||||| ||||| || || Sbjct 397889 GATACAATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCAG 397948 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | |||||||||||| ||||||||| | |||| | | ||||| ||| Sbjct 397949 CAACGTCTGATCTTTGCCGGTAAGCAACTCGAAGATGGCCGAACCCTTGCTGATTACAAT 398008 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 398009 ATTCAGAAGGAGTCAACCCTTCAT 398032 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | |||||||| || || || | || || || || Sbjct 398741 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACGATCACTCTGGAGGTGGAGAGCTCG 398800 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||||| || ||||| || || ||||| || |||||||| || Sbjct 398801 GATACTATTGATAATGTGAAAACAAAGATACAGGACAAGGAAGGGATCCCTCCAGATCAG 398860 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||||| ||||||||||||| | |||||| Sbjct 398861 CAGAGGCTGATTTTTGCCGGTAAGCAGTTGGAAGAT 398896 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || || || ||||| | || || ||| ||| Sbjct 398057 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAGACCATTACCCTTGAGGTTGAAAGCTCT 398116 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||| ||||| || ||||| || || ||||| ||| Sbjct 398117 GACACCATTGACAATGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCAGACCAA 398176 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || || || ||||| ||| | ||| || | ||||||||| Sbjct 398177 CAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTCTAGCTGATTATAAT 398236 Query 156003 AT 156004 || Sbjct 398237 AT 398238 >seq170 Length=38796167 Score = 105 bits (116), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | ||| ||||||| || || ||||||||||| | Sbjct 3261367 AAAATGCAGATTTTCGTGAAAACCGTAACTAGAAAAACCATAACCCTAGAAGTCGAATCT 3261308 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 | |||| || |||||||||| || || ||||| || ||||| || | ||||| Sbjct 3261307 TTCGATATAATCGACAACGTGAAAACAAAGATCCAAGACAAGGAAGGAATTTCACCAGAT 3261248 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | |||||| ||| | || || | |||||| |||||| | |||||| Sbjct 3261247 CAACAACGCCTGATTTTCGCCAGAAAACAATTGGAAGATGGAAGAACTCTCGTAGATTAC 3261188 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||||| || ||||||||| ||||| || Sbjct 3261187 AACATTCAGAAAGAATTGAAGCTTCATTTGGTGTTCAG 3261150 >seq58 Length=2649046 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || || || ||||| || ||||| ||| || Sbjct 1146927 ATGCAAATCTTTGTGAAGACTCTCACCGGGAAGACGATTACTTTGGAAGTTGAAAGCTCG 1146986 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || || || || ||||| || |||||||| || Sbjct 1146987 GATACGATCGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 1147046 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| |||||||||||||||||| | | ||||| | ||||| ||| Sbjct 1147047 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGTACTTTGGCTGATTACAAT 1147106 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || | || |||||||| || Sbjct 1147107 ATCCAGAAGGAATCCACCCTTCATTTGGT 1147135 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || ||||| || || || || || ||| Sbjct 1147155 ATGCAGATTTTTGTCAAGACATTGACTGGCAAGACTATCACCTTGGAGGTGGAGAGTTCC 1147214 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| || ||||| ||||| || || ||||| || Sbjct 1147215 GATACTATCGACAATGTCAAGGCGAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1147274 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || ||||||||||| || ||| || ||||| | || || || Sbjct 1147275 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGAAGGACTTTGGCTGACTACAAC 1147334 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || |||||||| ||| | | || || || ||| Sbjct 1147335 ATCCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTTGAGGGGTGGT 1147382 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||| || || || || | ||||||||| ||| Sbjct 1146699 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAAAGTTCC 1146758 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| ||| ||||| ||||| || |||||||| || ||||| || Sbjct 1146759 GATACTATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACCAGACCAG 1146818 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||| |||| | || || |||||||||||||| Sbjct 1146819 CAAAGGCTGATCTTCGCTGGAAAGCAGCTCGAAGA 1146853 >seq1 Length=34941034 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| | || || || || | || || ||||| || |||| Sbjct 3649792 ATGCAGATCTTTGTTAAAACCCTCACAGGCAAGACAGTAACCTTGGAAGTTGAGAGTTCT 3649851 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || | ||| || || || || ||||| || || ||||| || Sbjct 3649852 GACACTATTGAGAACGTCAAGACTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 3649911 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||| ||||| || ||| ||| || || | ||||||||| Sbjct 3649912 CAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCCGATTATAAT 3649971 Query 156003 AT 156004 || Sbjct 3649972 AT 3649973 >seq57 Length=33024243 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | || || ||||| || || ||||||||||| Sbjct 18658461 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 18658402 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || || |||||| || || ||||| ||||||||||| || ||||| Sbjct 18658401 TCCGACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAGAC 18658342 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | |||||| ||||| || || || |||||| | || | | ||||| Sbjct 18658341 CAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATTAC 18658282 Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025 || || |||||| |||| ||||| Sbjct 18658281 AACATCCAGAAAGAGTCGACTCTTCA 18658256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731503813493600